PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12465_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 756aa MW: 83660.3 Da PI: 4.4752

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12465_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.6	4.9e-12	604	645	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rWT+++ el+++avkq+G++ + I + ++ gRt+ q+k+++ k cra_locus_12465_iso_2_len_2886_ver_3 604 RWTKQDTELFYEAVKQFGTD-LSMIQQLFP-GRTRRQVKLKYKK 645 8*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	5.9E-27	595	676	No hit	No description
PROSITE profile	PS51293	9.482	600	648	IPR017884	SANT domain
SMART	SM00717	1.2E-8	601	649	IPR001005	SANT/Myb domain
CDD	cd00167	5.06E-8	604	645	No hit	No description
SuperFamily	SSF46689	5.83E-11	604	651	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-6	604	645	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence Send to blast
MDSAPFDDIF SDNAVKNARA GSKFQPRAKP RPPKKNSTTP STALSLQFQT TDSSVNTFTE 60 SCGVKDPSGL DGQGSSGIVN APSVDAGTTE NVNSTVGLDP GVSIFIPDSN EDWGSCFEKS 120 VGENGDIFIG LESFGDFLPD SSAVIDNSVP SSEAPAVDVP GSSNTEEGRI DPTVPAVDDS 180 ACFSDVPGIS SQPETSAAED PLTGPETIIS ASHGDDRDLD KEDLESYPCL ETLDISELAN 240 RSGRRIGKFQ PKPKSQLERH QTNISDLDLV HPVPTVSRQQ DSQLVPPEVN FVDHGLVTAS 300 TQNDILEFSS VGLSGPAAEI ASEAEESNPI EPSHAGAGIP GEHLESVPGK LTSRRAKTGK 360 SRKTVSDHLS PEHPTSNQTE TAGRVLRKRQ NNNNVYQLRD ESEDEVVADG DLPSSSPSVF 420 AAKGNKNDDQ EYQPENESLT KKVKKSKKTP GDKEKPVRKQ KKDNETSDQT AKAAPKKFLH 480 STRRRRVNKT LLETPEDEID FQKVPLRDLI LLAEHKERMA KKEATPSRAP PSNHSDNSLF 540 YSAGDFVEPD NEDRGGDDFQ QYYDEPFASE QGGEANDKES SPRVQENSEY FNYQTYMDKT 600 PIARWTKQDT ELFYEAVKQF GTDLSMIQQL FPGRTRRQVK LKYKKEERQH PLRLRDALTN 660 RARDHSHFEL VIDRLRQLAA EEKQNSDKAE SVDLTAEEEA EEEAPETSDK EGKSEQMDEE 720 MMEKTEPDYN KQVQSPVKTY DSEDDLLLWN QYKSEE

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence Send to blast

MDSAPFDDIF SDNAVKNARA GSKFQPRAKP RPPKKNSTTP STALSLQFQT TDSSVNTFTE  60
SCGVKDPSGL DGQGSSGIVN APSVDAGTTE NVNSTVGLDP GVSIFIPDSN EDWGSCFEKS  120
VGENGDIFIG LESFGDFLPD SSAVIDNSVP SSEAPAVDVP GSSNTEEGRI DPTVPAVDDS  180
ACFSDVPGIS SQPETSAAED PLTGPETIIS ASHGDDRDLD KEDLESYPCL ETLDISELAN  240
RSGRRIGKFQ PKPKSQLERH QTNISDLDLV HPVPTVSRQQ DSQLVPPEVN FVDHGLVTAS  300
TQNDILEFSS VGLSGPAAEI ASEAEESNPI EPSHAGAGIP GEHLESVPGK LTSRRAKTGK  360
SRKTVSDHLS PEHPTSNQTE TAGRVLRKRQ NNNNVYQLRD ESEDEVVADG DLPSSSPSVF  420
AAKGNKNDDQ EYQPENESLT KKVKKSKKTP GDKEKPVRKQ KKDNETSDQT AKAAPKKFLH  480
STRRRRVNKT LLETPEDEID FQKVPLRDLI LLAEHKERMA KKEATPSRAP PSNHSDNSLF  540
YSAGDFVEPD NEDRGGDDFQ QYYDEPFASE QGGEANDKES SPRVQENSEY FNYQTYMDKT  600
PIARWTKQDT ELFYEAVKQF GTDLSMIQQL FPGRTRRQVK LKYKKEERQH PLRLRDALTN  660
RARDHSHFEL VIDRLRQLAA EEKQNSDKAE SVDLTAEEEA EEEAPETSDK EGKSEQMDEE  720
MMEKTEPDYN KQVQSPVKTY DSEDDLLLWN QYKSEE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027087506.1	0.0	uncharacterized protein LOC113708958 isoform X1
Refseq	XP_027087507.1	0.0	uncharacterized protein LOC113708958 isoform X1
TrEMBL	A0A068VEV1	0.0	A0A068VEV1_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5902	23	26