PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12489_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 184aa MW: 21447.5 Da PI: 5.268

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12489_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.3	5.1e-16	85	141	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 +++rr+++NRe+ArrsR RK++ ++eL v L +eN++L+++l++ ++ +++ + cra_locus_12489_iso_1_len_871_ver_3 85 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLIDKLNHVSERHDQVLQ 141 689********************************************9998877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-14	81	145	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.726	83	146	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-13	85	135	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.6E-13	85	159	No hit	No description
Pfam	PF00170	5.6E-14	85	143	IPR004827	Basic-leucine zipper domain
CDD	cd14702	2.42E-18	86	137	No hit	No description
PROSITE pattern	PS00036	0	88	103	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
XAETMQPSEA TELYYLLPSN PTQHPAHFGL NNNNMSAFHL SRLSNPLYHL QITPQVQDFN 60 LQACFSSNST SDEADEQQLS LINERKQRRM ISNRESARRS RMRKQKHLDE LWSQVVWLRN 120 ENHQLIDKLN HVSERHDQVL QENAQLKEEA SELRQMLSNM QLNSPFPNLR DLDDDDACDG 180 LSCD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	104	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00389	DAP	Transfer from AT3G30530	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027153840.1	1e-102	basic leucine zipper 43-like
Swissprot	Q9FMC2	2e-44	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A068U1H7	2e-99	A0A068U1H7_COFCA; Uncharacterized protein
STRING	XP_009603686.1	1e-88	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA947	24	92

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]