PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12529_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family AP2
Protein Properties Length: 181aa    MW: 19809.4 Da    PI: 4.2898
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12529_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.11.2e-09153181134
                                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslg 34 
                                          s+y+GV++++++grW+++I+d      + k+++lg
  cra_locus_12529_iso_1_len_987_ver_3 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLG 181
                                          78*******************......55***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.9154181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MLDLNLNVMI DEELEKCVEG LGDYESATSN SSVVNADVAA EASSNATTAD DDTCSPAAAA  60
AADICTFNFD ILKVNAAGGE EAEGEEDNRL VGGTQSEFVT RDLFPSNRAV DGTESNRGPN  120
DGNNWVDLSF GQQQRQQQQQ VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL  180
G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087014.14e-46ethylene-responsive transcription factor RAP2-7-like isoform X2
TrEMBLA0A068UKW45e-44A0A068UKW4_COFCA; Uncharacterized protein
STRINGXP_009784819.12e-38(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116