PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12546_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 257aa    MW: 28233.6 Da    PI: 4.5816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12546_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.4e-101802201055
                                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                          r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  cra_locus_12546_iso_1_len_769_ver_3 180 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 220
                                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-14169236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.224170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12175230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-11179224No hitNo description
PfamPF000106.9E-8180220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
XSTSSSSANL WHSQENECPN YSSEETSAAA EIMYSFSSPY NNHNYVYPMS SAGSAWTEFL  60
NQDLSNDSMD QSAGEAVSEG TIRDHEIIIA VPAAAHETSV EDSKEDSXII RDIKEKKPKK  120
NHQKINDESI SCPSEEDDSS NGGGSGSGSA MVPLPPALNL NGKTRANRGS ATDPQSLYAR  180
KRRERINERL RILQNLVPNG TKVDISTMLE EAVQYVKFLQ LQIKLLSSDE LWMYAPIAYN  240
GMDIGLDLKI DATPKSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836777.12e-65PREDICTED: transcription factor bHLH54-like
SwissprotQ7XHI91e-61BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A022RB655e-64A0A022RB65_ERYGU; Uncharacterized protein
STRINGMigut.B00443.1.p6e-65(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101