PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12556_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB

Protein Properties

Length: 245aa MW: 26805.9 Da PI: 5.4051

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12556_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.2	1.9e-18	11	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+++G+++W++I+ ++ gR++k+c++rw + cra_locus_12556_iso_1_len_983_ver_3 11 KGSWSPQEDATLIKLVEEHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 56 799***************************.*********985 PP
2	Myb_DNA-binding	57.8	2.5e-18	65	107	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++++Ede++++a+ +G++ W+tIar ++ gRt++ +k++w++ cra_locus_12556_iso_1_len_983_ver_3 65 PFSEQEDEIIIQAHSVHGNR-WATIARLLP-GRTDNAIKNHWNST 107 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.487	6	57	IPR017930	Myb domain
SuperFamily	SSF46689	1.12E-30	9	104	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-16	10	59	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-18	11	56	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-25	12	64	IPR009057	Homeodomain-like
CDD	cd00167	4.52E-15	13	55	No hit	No description
PROSITE profile	PS51294	26.6	58	112	IPR017930	Myb domain
SMART	SM00717	4.0E-16	62	110	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.6E-24	65	111	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-15	65	107	IPR001005	SANT/Myb domain
CDD	cd00167	3.53E-13	65	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MEAASSGERI KGSWSPQEDA TLIKLVEEHG PRNWSLISTG IPGRSGKSCR LRWCNQLSPS 60 VQHRPFSEQE DEIIIQAHSV HGNRWATIAR LLPGRTDNAI KNHWNSTLKR KRQIDSEFPV 120 SSAAAKRQCL EESVAAGSSQ EQSSSGGDDF EEMGLGLIDG PETCLSLLPP GGGTLVESLL 180 MSDDQRKGGS EKEEQRSTAE IEENCLVTIM QRMIAHEVRS YIDKIRSQGG LQIGPGFQSE 240 GLNGP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-40	8	111	1	104	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009785340.1	1e-100	PREDICTED: myb protein-like
Refseq	XP_016515570.1	1e-100	PREDICTED: transcription factor MYB44-like
TrEMBL	A0A1S4DQ72	2e-98	A0A1S4DQ72_TOBAC; transcription factor MYB44-like
TrEMBL	A0A1U7XFV8	2e-98	A0A1U7XFV8_NICSY; myb protein-like
STRING	XP_009785340.1	3e-99	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12883	16	20