PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12601_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 134aa    MW: 14949.7 Da    PI: 10.3547
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12601_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.51.2e-211466156
                                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                          ++y+G+r+++ +g+++AeIrdps ng  +r +lg+f+taeeAa+a+++a+ +l+g+
  cra_locus_12601_iso_1_len_1137_ver_3 14 PRYRGIRRRP-WGKYAAEIRDPSRNG--ARLWLGTFDTAEEAARAYDRAAYALRGH 66
                                          68********.**********98887..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-151466IPR001471AP2/ERF domain
CDDcd000184.77E-181475No hitNo description
Gene3DG3DSA:3.30.730.102.0E-321574IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-241574IPR016177DNA-binding domain
PROSITE profilePS5103225.0671573IPR001471AP2/ERF domain
SMARTSM003801.1E-341579IPR001471AP2/ERF domain
PRINTSPR003679.2E-121627IPR001471AP2/ERF domain
PRINTSPR003679.2E-123955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MDNNNNEEQG RKEPRYRGIR RRPWGKYAAE IRDPSRNGAR LWLGTFDTAE EAARAYDRAA  60
YALRGHQAIL NFPNDGEYRN PSPVGGGGAA IHSFNYSGGA RAGTSSSSSS SSXXXXXXQQ  120
QQQQQQDNKR PKHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-291075974Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610278.14e-40PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_016485379.14e-40PREDICTED: ethylene-responsive transcription factor ERF098-like
TrEMBLA0A1S4B9251e-38A0A1S4B925_TOBAC; ethylene-responsive transcription factor ERF098-like
STRINGXP_009610278.12e-39(Nicotiana tomentosiformis)