PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12635_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

CPP

Protein Properties

Length: 537aa MW: 58599.8 Da PI: 7.9517

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12635_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45.9	1.1e-14	131	167	2	39
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C+N+ cra_locus_12635_iso_1_len_2032_ver_3 131 KRKQCNCKNSRCLKLYCECFASGIYCDG-CNCVNCHNT 167 789***********************.******7 PP
2	TCR	52.1	1.3e-16	215	254	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgCnCkks ClkkYCeCf+a++ Cse+CkC dCkN e cra_locus_12635_iso_1_len_2032_ver_3 215 KHNKGCNCKKSGCLKKYCECFQANVLCSENCKCIDCKNFE 254 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.3E-15	130	170	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.66	131	255	IPR005172	CRC domain
Pfam	PF03638	6.3E-12	133	167	IPR005172	CRC domain
SMART	SM01114	9.3E-20	215	256	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.7E-13	218	253	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MKQNEAGGAI NGELLAKKLV RQLDFTATPM CRSSVNVILP EHPQAQLQSK LLALARPPQS 60 SFEVKSTPVP PMSHRQQKST AMTVPCLTHF VKPLSRQTLL PATSLLFAEN KGSLYSEDLC 120 NLELRDITPK KRKQCNCKNS RCLKLYCECF ASGIYCDGCN CVNCHNTIDC EAARKEAVDT 180 ILDRNPDAFR PKIASSPIGS KDGKVVAGAV TILGKHNKGC NCKKSGCLKK YCECFQANVL 240 CSENCKCIDC KNFEGSEERR SLLCGGPANS LRYSHQETNA AIVGALGFSS LTPLPAAKRR 300 KSEQPLTGAT FDDVITNRLE QIRQEVVXTT FAASTSPLSV STSAPTAATL STVSKCKYRS 360 QLVDTLQMQH VKKLCSFLVT LSAEAAKRLP EKNHGADEGE LNLPEKFFSS PKHGSEQIHH 420 QDYAEPLSTN QQDASGTHSG ESTVGDQQNG RIASPGASSC MKGFNPVYAE QERLVLTKFC 480 DFLNGLITCD SIRETSFSSP RSGLGSQGES APEXHHKIYN QNRDDMDSED YDANQST

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MKQNEAGGAI NGELLAKKLV RQLDFTATPM CRSSVNVILP EHPQAQLQSK LLALARPPQS  60
SFEVKSTPVP PMSHRQQKST AMTVPCLTHF VKPLSRQTLL PATSLLFAEN KGSLYSEDLC  120
NLELRDITPK KRKQCNCKNS RCLKLYCECF ASGIYCDGCN CVNCHNTIDC EAARKEAVDT  180
ILDRNPDAFR PKIASSPIGS KDGKVVAGAV TILGKHNKGC NCKKSGCLKK YCECFQANVL  240
CSENCKCIDC KNFEGSEERR SLLCGGPANS LRYSHQETNA AIVGALGFSS LTPLPAAKRR  300
KSEQPLTGAT FDDVITNRLE QIRQEVVXTT FAASTSPLSV STSAPTAATL STVSKCKYRS  360
QLVDTLQMQH VKKLCSFLVT LSAEAAKRLP EKNHGADEGE LNLPEKFFSS PKHGSEQIHH  420
QDYAEPLSTN QQDASGTHSG ESTVGDQQNG RIASPGASSC MKGFNPVYAE QERLVLTKFC  480
DFLNGLITCD SIRETSFSSP RSGLGSQGES APEXHHKIYN QNRDDMDSED YDANQST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	8e-32	123	263	2	131	Protein lin-54 homolog
5fd3_B	8e-32	123	263	2	131	Protein lin-54 homolog
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	132	LRDITPKKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027182561.1	1e-156	protein tesmin/TSO1-like CXC 5
TrEMBL	A0A068V612	1e-146	A0A068V612_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA19332	3	3