PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12774_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 157aa MW: 18538.2 Da PI: 10.1001

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12774_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23	1.4e-07	88	131	3	51
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYI 51 +h ++Er RR++ ++++ eL llP+ +s K+s i+++A + I cra_locus_12774_iso_1_len_738_ver_3 88 HKHMINERMRREKEKQSYIELHNLLPTgT---KSDKNS---IVQMARKTI 131 57999**********************44...555555...555555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.42E-10	79	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.56E-6	83	127	No hit	No description
PROSITE profile	PS50888	11.534	85	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.6E-5	88	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-5	89	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
XREPNKNRGE IRAMELYFSE FVDYGVEEQL PWFDVALGVN QSAFVKFKDQ PRKAFPLNNQ 60 NLNKKMVDFL KKSWIGSVGV ETEKERNHKH MINERMRREK EKQSYIELHN LLPTGTKSDK 120 NSIVQMARKT IEXXXXXXXX XXXXXXXXXX XXXXXNA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	97	RNHKHMINERMRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016462348.1	6e-31	PREDICTED: transcription factor bHLH92-like
TrEMBL	A0A1S3ZD67	1e-29	A0A1S3ZD67_TOBAC; transcription factor bHLH92-like
STRING	XP_009614938.1	9e-30	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12463	18	21