PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12832_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 186aa MW: 21548.9 Da PI: 10.2006

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12832_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.5	1.6e-15	105	184	1	86
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 f+k +++s v+k +l+lp+ f+e h + e + t++lede+ +++ k+ +++ l++GW++F a+ cra_locus_12832_iso_1_len_1405_ver_3 105 FVKPMIRSIVTKGFWLSLPRLFCELHL-P-EHDATVILEDENQTEYNTKY--LAERRG--LSGGWRGFSIAHS 171 89*******************8884.3.46679***********..555555..9******** PP --TT-EEEEEE-S CS B3 74 LkegDfvvFkldg 86 L egD++vF++++ cra_locus_12832_iso_1_len_1405_ver_3 172 LIEGDVLVFHMVR 184 *******9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.12E-19	99	185	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.6E-15	99	184	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.60E-23	103	186	No hit	No description
Pfam	PF02362	3.5E-13	105	184	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.815	105	186	IPR003340	B3 DNA binding domain
SMART	SM01019	5.6E-10	105	186	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MKRKNRFETT RNLLETPYGI QFRPQQRESG ICADGDQKQM FSPHLDVSKQ NPCHTSLMAV 60 PKKLRKSRRR MAMIQDLYGQ VEATSSIMKR AQTVQTYLDA RFPSFVKPMI RSIVTKGFWL 120 SLPRLFCELH LPEHDATVIL EDENQTEYNT KYLAERRGLS GGWRGFSIAH SLIEGDVLVF 180 HMVRST

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027112464.1	2e-70	B3 domain-containing protein Os05g0481400-like isoform X1
Refseq	XP_027112465.1	1e-70	B3 domain-containing protein Os01g0234100-like isoform X2
Swissprot	Q10QS9	2e-35	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	A0A1J6IMH7	9e-53	A0A1J6IMH7_NICAT; B3 domain-containing protein
STRING	XP_009778967.1	2e-53	(Nicotiana sylvestris)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]