PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12832_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 174aa    MW: 19945.6 Da    PI: 7.9428
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12832_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.62.2e-13681431598
                                           -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                                    B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                             +lp+ f+e h  + e + t++lede+  +++ k+     +++  l++GW++F  a+ L egD++vF++++ 
  cra_locus_12832_iso_3_len_1267_ver_3  68 KKSLPRLFCELHL-P-EHDATVILEDENQTEYNTKY--LAERRG--LSGGWRGFSIAHSLIEGDVLVFHMVRY 134
                                           469******8884.3.46679***************..555555..9**********************8774 PP

                                           SEE..EEEEE- CS
                                    B3  88 sefelvvkvfr 98 
                                            +  ++v ++r
  cra_locus_12832_iso_3_len_1267_ver_3 135 CK--MKVYIIR 143
                                           44..4777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-1450145IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.71554145IPR003340B3 DNA binding domain
SMARTSM010191.6E-957145IPR003340B3 DNA binding domain
PfamPF023625.7E-1168144IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-1668145IPR015300DNA-binding pseudobarrel domain
CDDcd100177.62E-1870143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MKRKNRFETT RNLLETPYGI QFRPQQRESG ICADGDQKQM FSPHLDVSKQ NPCHTSLMAV  60
PKKXEEIKKS LPRLFCELHL PEHDATVILE DENQTEYNTK YLAERRGLSG GWRGFSIAHS  120
LIEGDVLVFH MVRYCKMKVY IIRSDHFAEV DAALCLLHLD AHRTGTSSGQ LVSP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112464.11e-51B3 domain-containing protein Os05g0481400-like isoform X1
RefseqXP_027112465.18e-52B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A1J6IMH76e-46A0A1J6IMH7_NICAT; B3 domain-containing protein
STRINGXP_009612764.16e-46(Nicotiana tomentosiformis)