PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12832_iso_7

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 225aa MW: 25889.9 Da PI: 9.7619

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12832_iso_7	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.4	4.1e-16	105	194	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 f+k +++s v+k +l+lp+ f+e h + e + t++lede+ +++ k+ +++ l++GW++F a+ cra_locus_12832_iso_7_len_1421_ver_3 105 FVKPMIRSIVTKGFWLSLPRLFCELHL-P-EHDATVILEDENQTEYNTKY--LAERRG--LSGGWRGFSIAHS 171 89*******************8884.3.46679***********..555555..9******** PP --TT-EEEEEE-SSSEE..EEEEE- CS B3 74 LkegDfvvFkldgrsefelvvkvfr 98 L egD++vF++++ + ++v ++r cra_locus_12832_iso_7_len_1421_ver_3 172 LIEGDVLVFHMVRYCK--MKVYIIR 194 ********877444..4777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.26E-21	99	196	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.3E-18	99	196	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.30E-25	103	194	No hit	No description
PROSITE profile	PS50863	11.843	105	196	IPR003340	B3 DNA binding domain
SMART	SM01019	2.3E-17	105	196	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.3E-14	105	195	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MKRKNRFETT RNLLETPYGI QFRPQQRESG ICADGDQKQM FSPHLDVSKQ NPCHTSLMAV 60 PKKLRKSRRR MAMIQDLYGQ VEATSSIMKR AQTVQTYLDA RFPSFVKPMI RSIVTKGFWL 120 SLPRLFCELH LPEHDATVIL EDENQTEYNT KYLAERRGLS GGWRGFSIAH SLIEGDVLVF 180 HMVRYCKMKV YIIRSDHFAE VDAALCLLHL DAHRTGTSSG QLVSP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027112464.1	5e-86	B3 domain-containing protein Os05g0481400-like isoform X1
Refseq	XP_027112465.1	4e-86	B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBL	A0A1J6IMH7	2e-71	A0A1J6IMH7_NICAT; B3 domain-containing protein
STRING	XP_009778967.1	1e-71	(Nicotiana sylvestris)