PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1291_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 562aa    MW: 62066 Da    PI: 4.4319
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1291_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.34.4e-4761331128
                                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgk 72 
                                          lppGfrFhPtd el+++yLk+k+ gkk+++ e+i+e++iyk+ PwdLp k ++k+++ +wyfF++r++ky++g+
  cra_locus_1291_iso_2_len_2649_ver_3   6 LPPGFRFHPTDIELIMYYLKRKIMGKKFHF-EAISELNIYKFSPWDLPdKsCLKSKDLNWYFFCPRERKYSSGD 78 
                                          79***************************9.89**************96347788888**************** PP

                                  NAM  73 rknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                          r +r t++gyWk+tgkd++++  k+++vg+ ktLvf++g  pkg++tdWv+ eyr+
  cra_locus_1291_iso_2_len_2649_ver_3  79 RMRRGTDTGYWKTTGKDRSIVY-KERVVGMVKTLVFHEGCPPKGKRTDWVVYEYRM 133
                                          **********************.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-563156IPR003441NAC domain
PROSITE profilePS5100552.4016156IPR003441NAC domain
PfamPF023652.2E-237133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MARACLPPGF RFHPTDIELI MYYLKRKIMG KKFHFEAISE LNIYKFSPWD LPDKSCLKSK  60
DLNWYFFCPR ERKYSSGDRM RRGTDTGYWK TTGKDRSIVY KERVVGMVKT LVFHEGCPPK  120
GKRTDWVVYE YRMDDKDLAD AGVSQDAYVL YKVFKKNGPG PRNGAQYGAP FNEEEWNDDD  180
SGIPVDIPSD GPSPTVLTLP RNPNSVASKS VIDPVCPSAS SLGEAGPSLV QPDPDDVILD  240
GLSNSIVMDM FGPQCTPGWA FAKNGPFPAG PSVNDVPYSP NDDIAHLLVE FTGEGTGCPN  300
EENYELDRLC HGRYNVVAPQ LNGNDPFNGL EDLSRAELNV AHFPGGPGYI DKMLPQDDME  360
FLELNDLDAP LKFLEDFVGS EKICTGSSYE VSNADDLSKA GLNGVNFSGG SGYLNNMLPQ  420
DDMAFLELND LDAPLNFPED FVGSEKIFTG SSYEVSHADA PEHLTGISST QFSYGAGSGE  480
ICYNNFPHSE TELPGLSEFP LLPNSSGGHL DSTIVYPMEN AYRSVLSQRF AAGYNLHSFS  540
YGQPEESRGA AENQERGRSH NF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-40115712166NO APICAL MERISTEM PROTEIN
1ut4_B2e-40115712166NO APICAL MERISTEM PROTEIN
1ut7_A2e-40115712166NO APICAL MERISTEM PROTEIN
1ut7_B2e-40115712166NO APICAL MERISTEM PROTEIN
3swm_A3e-40115715169NAC domain-containing protein 19
3swm_B3e-40115715169NAC domain-containing protein 19
3swm_C3e-40115715169NAC domain-containing protein 19
3swm_D3e-40115715169NAC domain-containing protein 19
3swp_A3e-40115715169NAC domain-containing protein 19
3swp_B3e-40115715169NAC domain-containing protein 19
3swp_C3e-40115715169NAC domain-containing protein 19
3swp_D3e-40115715169NAC domain-containing protein 19
3ulx_A3e-40613315140Stress-induced transcription factor NAC1
4dul_A2e-40115712166NAC domain-containing protein 19
4dul_B2e-40115712166NAC domain-containing protein 19
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPGSC0003DMT4000737791e-106(Solanum tuberosum)