PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12960_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 325aa MW: 36746.8 Da PI: 8.1005

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12960_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	72.9	8.1e-23	52	191	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFsk 63 lp G++F+P+d yL+kk+++ +l ++ik++++y+++P +L + + +++++ewyf s+ cra_locus_12960_iso_1_len_1101_ver_3 52 LPSGYKFSPSD------YLAKKIANPSLCW-DHIKDFNVYQYDPPQLIAaayptssvvnEGEGDSSEWYFISE 117 6899***97......******988.89**********7446787875543333566*** PP NAM 64 rdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy............kgrapkgektdWvmh 124 r kky r++r+tksgyWk +g++ ++ +++g ++g kk+Lvf+ ++ ++k++kt+W m cra_locus_12960_iso_1_len_1101_ver_3 118 RPKKYG---RSTRSTKSGYWKGSGHNPQIRDQRGIHIGNKKSLVFFygheqqgskpkhHQYKEKSRKTNWHMF 187 96...89999***************************978877666655445666777*** PP NAM 125 eyrl 128 ey+l cra_locus_12960_iso_1_len_1101_ver_3 188 EYEL 191 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	25.88	46	227	IPR003441	NAC domain
SuperFamily	SSF101941	9.29E-30	47	226	IPR003441	NAC domain
Pfam	PF02365	7.3E-12	53	191	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MEVPSTATAT SSAGPPANFG PNCSTAIVNY VQSEPSSPPE TEGLVVVHGN KLPSGYKFSP 60 SDYLAKKIAN PSLCWDHIKD FNVYQYDPPQ LIAAAYPTSS VVNEGEGDSS EWYFISERPK 120 KYGRSTRSTK SGYWKGSGHN PQIRDQRGIH IGNKKSLVFF YGHEQQGSKP KHHQYKEKSR 180 KTNWHMFEYE LHHNHPITPS KLKKTAQSDD EDRMRLDGYV LCKIYIGGYG KFPKIQENEG 240 IGRTNSRKIE NPSTSSVLRT NDGMVKGNGN FQANSQQIVN DHQVNTNNMD PSQMQFWEDM 300 QLDMDFIDSF VNNNSMDDFG FLNKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-18	52	225	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-18	52	225	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-18	52	225	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-18	52	225	17	163	NO APICAL MERISTEM PROTEIN
4dul_A	2e-18	52	225	17	163	NAC domain-containing protein 19
4dul_B	2e-18	52	225	17	163	NAC domain-containing protein 19