PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12983_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 368aa    MW: 41490.4 Da    PI: 6.3895
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12983_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.93.9e-53161451129
                                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyat 70 
                                           +ppGfrFhPt+eel+++yL+kkv++kk++l +vi++vd++k+ePwd+++k++     +++wyfFs++dkky+t
  cra_locus_12983_iso_1_len_1207_ver_3  16 VPPGFRFHPTEEELLHYYLRKKVASKKIDL-DVIRDVDLNKLEPWDIQEKCRIgstPQNDWYFFSHKDKKYPT 87 
                                           69****************************.9***************964443122456************** PP

                                   NAM  71 gkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                           g+r+nrat++g+Wkatg+dk ++s +++ +g++ktLvfykgrap+g+k+dW+mheyrle
  cra_locus_12983_iso_1_len_1207_ver_3  88 GTRTNRATAAGFWKATGRDKVIYS-NSKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLE 145
                                           ************************.9999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-5812177IPR003441NAC domain
PROSITE profilePS5100556.2916178IPR003441NAC domain
PfamPF023656.6E-2817144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0010047Biological Processfruit dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAPEQMNLCV NGQSQVPPGF RFHPTEEELL HYYLRKKVAS KKIDLDVIRD VDLNKLEPWD  60
IQEKCRIGST PQNDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKVIY SNSKRIGMRK  120
TLVFYKGRAP HGQKSDWIMH EYRLEDTTPP HDASSLACSM VGEGNSEEGW VVCRVFKNYH  180
KAHVDQSNSQ NSMMDLPEGS LIGTSKDGIL DRILVYMGRS SCKQENPPIN NIHDEDDVAM  240
QFINNNPIMS DDKFMHLPRL ENPLFNQHDC SSFSASQPSM NDIAETNSAS CTTEAAAGDW  300
VALDRLVASQ LNGQEEVFCF PAAAGSIRSH GYHHQPPQTQ AYEGAGSELD FWTFARSSSS  360
DPLCRLSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-471318317173NAC domain-containing protein 19
3swm_B1e-471318317173NAC domain-containing protein 19
3swm_C1e-471318317173NAC domain-containing protein 19
3swm_D1e-471318317173NAC domain-containing protein 19
3swp_A1e-471318317173NAC domain-containing protein 19
3swp_B1e-471318317173NAC domain-containing protein 19
3swp_C1e-471318317173NAC domain-containing protein 19
3swp_D1e-471318317173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00321DAPTransfer from AT2G46770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027080579.11e-145NAC domain-containing protein 12-like
SwissprotQ84WP61e-115NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A068UUQ01e-143A0A068UUQ0_COFCA; Uncharacterized protein
STRINGVIT_02s0025g02710.t011e-144(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]