PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13006_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 453aa MW: 51063.5 Da PI: 5.0702

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13006_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	33.5	1.2e-10	18	118	11	128
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 +ee + yL g++l+ +vi++++ y++ P++Lp + wy +++++k+ + g+W cra_locus_13006_iso_2_len_1619_ver_3 18 NEEAI-LYLDSFKPGSPLPR-NVIEDINPYQYRPSRLP------DGIWYIVHSTENKK---------NEFGFW 73 56666.79999999999999.89************9......34688887776653.........357* PP NAM 84 katgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 + + + e+++ ++ g ++tL f++ ++ + +t+Wvm+ey++ cra_locus_13006_iso_2_len_1619_ver_3 74 EVKEEAYEIFT-NSCISGWRTTLEFFELkDSLEQPRTNWVMEEYSI 118 *********.9999******752566778*******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.173	8	141	IPR003441	NAC domain
SuperFamily	SSF101941	4.32E-18	20	141	IPR003441	NAC domain
Pfam	PF02365	6.2E-7	32	118	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MCPPALDSPE YMVLNDSNEE AILYLDSFKP GSPLPRNVIE DINPYQYRPS RLPDGIWYIV 60 HSTENKKNEF GFWEVKEEAY EIFTNSCISG WRTTLEFFEL KDSLEQPRTN WVMEEYSIIQ 120 KGESATNKEK ELRKLCRVFL RSSNKEMLPD SRGTASDGRD ESHMMPSIAP SVDNVPRKGS 180 PSESLVGLLS SLHICRPWHV NVFFVPAEVL AVTSLLSESI KKSVANSHTL CSXPLEFXCL 240 IFRSKFPNFD NLATSLXSNM KDADEGTTFL SVADKLLNPW GDLSEQYVLN GDYLELDDLV 300 DPQSHSTSSE NSGRSSMTFD EYFDPIALLQ ELENNNNQDQ QGKDSSSRFS VVESSKSFEV 360 VMQPATSGSL VYSAERQEPT GCQPGSSVIE TKVLDERTAN HTVKRLKAEQ SDQGPRRSHT 420 KAASSSTNAA TQNGKKKVMK NKRIKKYFCF MPF

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MCPPALDSPE YMVLNDSNEE AILYLDSFKP GSPLPRNVIE DINPYQYRPS RLPDGIWYIV  60
HSTENKKNEF GFWEVKEEAY EIFTNSCISG WRTTLEFFEL KDSLEQPRTN WVMEEYSIIQ  120
KGESATNKEK ELRKLCRVFL RSSNKEMLPD SRGTASDGRD ESHMMPSIAP SVDNVPRKGS  180
PSESLVGLLS SLHICRPWHV NVFFVPAEVL AVTSLLSESI KKSVANSHTL CSXPLEFXCL  240
IFRSKFPNFD NLATSLXSNM KDADEGTTFL SVADKLLNPW GDLSEQYVLN GDYLELDDLV  300
DPQSHSTSSE NSGRSSMTFD EYFDPIALLQ ELENNNNQDQ QGKDSSSRFS VVESSKSFEV  360
VMQPATSGSL VYSAERQEPT GCQPGSSVIE TKVLDERTAN HTVKRLKAEQ SDQGPRRSHT  420
KAASSSTNAA TQNGKKKVMK NKRIKKYFCF MPF

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11207	21	23