PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13006_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 233aa    MW: 27159.7 Da    PI: 6.2566
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13006_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.23.6e-111811811128
                                  NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                          +ee +  yL     g++l+  +vi++++ y++ P++Lp      +  wy  +++++k+          + g+W+
  cra_locus_13006_iso_4_len_834_ver_3  18 NEEAI-LYLDSFKPGSPLPR-NVIEDINPYQYRPSRLP------DGIWYIVHSTENKK---------NEFGFWE 74 
                                          56666.79999999999999.89**************9......34688887776653.........357**** PP

                                  NAM  85 atgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                                           + +  e+++ ++   g ++tL f++  ++ +  +t+Wvm+ey++
  cra_locus_13006_iso_4_len_834_ver_3  75 VKEEAYEIFT-NSCISGWRTTLEFFELkDSLEQPRTNWVMEEYSI 118
                                          **********.9999**********752566778*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.2928143IPR003441NAC domain
SuperFamilySSF1019411.23E-1620129IPR003441NAC domain
PfamPF023651.7E-732118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MCPPALDSPE YMVLNDSNEE AILYLDSFKP GSPLPRNVIE DINPYQYRPS RLPDGIWYIV  60
HSTENKKNEF GFWEVKEEAY EIFTNSCISG WRTTLEFFEL KDSLEQPRTN WVMEEYSIIQ  120
KGESATNKEK VKHRLISCKN HFVIYEXYEQ RKANSHTTNX LVIXWDHVQE LRKLCRVFLR  180
SSNKEMLPDS RGTASDGRDE SHMMPSIAPS VDNVPRKGSP SESLVKVSKF RQX