PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13006_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 379aa    MW: 42877.7 Da    PI: 4.7693
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13006_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM348.5e-111811811128
                                   NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                           +ee +  yL     g++l+  +vi++++ y++ P++Lp      +  wy  +++++k+          + g+W
  cra_locus_13006_iso_6_len_1396_ver_3  18 NEEAI-LYLDSFKPGSPLPR-NVIEDINPYQYRPSRLP------DGIWYIVHSTENKK---------NEFGFW 73 
                                           56666.79999999999999.89**************9......34688887776653.........357*** PP

                                   NAM  84 katgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                                           + + +  e+++ ++   g ++tL f++  ++ +  +t+Wvm+ey++
  cra_locus_13006_iso_6_len_1396_ver_3  74 EVKEEAYEIFT-NSCISGWRTTLEFFELkDSLEQPRTNWVMEEYSI 118
                                           ***********.9999**********752566778*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.1738141IPR003441NAC domain
SuperFamilySSF1019413.01E-1820141IPR003441NAC domain
PfamPF023654.5E-732118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MCPPALDSPE YMVLNDSNEE AILYLDSFKP GSPLPRNVIE DINPYQYRPS RLPDGIWYIV  60
HSTENKKNEF GFWEVKEEAY EIFTNSCISG WRTTLEFFEL KDSLEQPRTN WVMEEYSIIQ  120
KGESATNKEK ELRKLCRVFL RSSNKEMLPD SRGTASDGRD ESHMMPSIAP SVDNVPRKGS  180
PSESLMKDAD EGTTFLSVAD KLLNPWGDLS EQYVLNGDYL ELDDLVDPQS HSTSSENSGR  240
SSMTFDEYFD PIALLQELEN NNNQDQQGKD SSSRFSVVES SKSFEVVMQP ATSGSLVYSA  300
ERQEPTGCQP GSSVIETKVL DERTANHTVK RLKAEQSDQG PRRSHTKAAS SSTNAATQNG  360
KKKVMKNKRI KKYFCFMPF