PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1304_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family Whirly
Protein Properties Length: 189aa    MW: 21078.4 Da    PI: 9.2386
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1304_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly219.33.4e-68361741139
                               Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesc 74 
                                          s+yk+kaal+v+++ p+f+ ldsg++kl+++G++ll++a+a+++r+ydW++kq+f+ls+te+++l++l++k+sc
  cra_locus_1304_iso_1_len_1023_ver_3  36 SIYKGKAALTVEPRPPEFTPLDSGAFKLSKEGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEMGNLISLGTKDSC 109
                                          7************************************************************************* PP

                               Whirly  75 effhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                                          effhdp++++s+eG+vrk+lk+ePlpdGsG+f+nlsv+n+lv+ +e++++Pv+kaefavl+s+++
  cra_locus_1304_iso_1_len_1023_ver_3 110 EFFHDPFKGKSDEGRVRKVLKIEPLPDGSGHFFNLSVQNKLVNLDENIYIPVTKAEFAVLNSAFN 174
                                          *************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.5E-7825187IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544476.51E-7429187IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.9E-6337171IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MLDWIVSLYG KFKTLLLYGI LGVTGTSPPR VFVGYSIYKG KAALTVEPRP PEFTPLDSGA  60
FKLSKEGFVL LQFAPAAGVR QYDWSRKQVF SLSVTEMGNL ISLGTKDSCE FFHDPFKGKS  120
DEGRVRKVLK IEPLPDGSGH FFNLSVQNKL VNLDENIYIP VTKAEFAVLN SAFNYVLPYL  180
LGWNTFAIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A1e-1042518532192p24: plant transcriptional regulator PBF-2
1l3a_B1e-1042518532192p24: plant transcriptional regulator PBF-2
1l3a_C1e-1042518532192p24: plant transcriptional regulator PBF-2
1l3a_D1e-1042518532192p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087065.21e-104single-stranded DNA-binding protein WHY1, chloroplastic
RefseqXP_024994382.11e-104single-stranded DNA-binding protein WHY1, chloroplastic-like
SwissprotQ9LL851e-103WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A068TVJ01e-102A0A068TVJ0_COFCA; Uncharacterized protein
STRINGSolyc05g007100.2.11e-102(Solanum lycopersicum)