PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13088_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 150aa    MW: 15845.3 Da    PI: 10.671
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13088_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.42e-183165135
                                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                          Cs C+tt TplWR gp g+k+LCnaCG++y kk++
  cra_locus_13088_iso_1_len_1049_ver_3 31 CSDCHTTRTPLWRGGPAGPKSLCNACGIKYNKKRR 65
                                          ********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-132583IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.5322560IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-122664No hitNo description
Gene3DG3DSA:3.30.50.101.2E-153065IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.0E-163165IPR000679Zinc finger, GATA-type
CDDcd002023.89E-113165No hitNo description
PROSITE patternPS0034403156IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDLKEEKRSE SAPENTKVSS SPSSSKQIKS CSDCHTTRTP LWRGGPAGPK SLCNACGIKY  60
NKKRRELLGL DRGRSENNKG KKKKKSGGGG GGGKSSGSSG GEVAQSLRMK LMALGGEMML  120
RRSGKLLGKL REEEQAAILL MALSCGSVCA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16284KRRELLGLDRGRSENNKGKKKKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027099199.14e-63GATA transcription factor 16-like
RefseqXP_027176929.14e-63GATA transcription factor 16-like
TrEMBLA0A068VHS22e-60A0A068VHS2_COFCA; Uncharacterized protein
STRINGMigut.D00108.1.p1e-53(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85032229