PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1311_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 342aa    MW: 37872.1 Da    PI: 7.8177
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1311_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.72.3e-28181240159
                                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                          ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+ + ed+++++ tYegeHnh+
  cra_locus_1311_iso_1_len_1815_ver_3 181 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVKEAXEDQSILVATYEGEHNHP 240
                                          58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-28171242IPR003657WRKY domain
PROSITE profilePS5081125.901176242IPR003657WRKY domain
SuperFamilySSF1182904.05E-24178242IPR003657WRKY domain
SMARTSM007742.1E-30181241IPR003657WRKY domain
PfamPF031064.6E-23182240IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEYTSLIDTS LDLNVKPLRL IDNGSLKQEV RSNFIDQLGR KMPLVKEEEN HGALMEELNR  60
VSAENQKLTQ MLTVMCENYD ALRKHLMDYM DKNPSSGGGG TDDINNNNNN NASKKRKLAE  120
SSSNINNDTI VDAAVATTTN GPSESSSSDE GSCKKPREEH IKSKISRVYV RTEASDTSLI  180
VKDGYQWRKY GQKVTRDNPS PRAYFKCSFA PSCPVKKKVK EAXEDQSILV ATYEGEHNHP  240
HPSKMENTST TSKCCVTTTI GSVPCSTSLS SSGGGPTITL DLTKQKSHET NPNPRKLESP  300
EFQHFLIEQM ASSLTKDPSF KAALAAAISG KFLQHNNQTE KW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-19166242174WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027167435.11e-159probable WRKY transcription factor 40
TrEMBLA0A2U9IY440.0A0A2U9IY44_CATRO; WRKY DNA-binding protein 40
STRINGcassava4.1_011696m1e-127(Manihot esculenta)