PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1311_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 343aa    MW: 37986.2 Da    PI: 7.8177
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1311_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.72.3e-28182241159
                                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                          ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+ + ed+++++ tYegeHnh+
  cra_locus_1311_iso_7_len_1818_ver_3 182 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVKEAXEDQSILVATYEGEHNHP 241
                                          58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-28172243IPR003657WRKY domain
PROSITE profilePS5081125.901177243IPR003657WRKY domain
SuperFamilySSF1182904.05E-24179243IPR003657WRKY domain
SMARTSM007742.1E-30182242IPR003657WRKY domain
PfamPF031064.6E-23183241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEYTSLIDTS LDLNVKPLRL IDNGSLKQEV RSNFIDQLGR KMPLVKEEEN HGALMEELNR  60
VSAENQKLTQ MLTVMCENYD ALRKHLMDYM DKNPSSGGGG TDDINNNNNN NNASKKRKLA  120
ESSSNINNDT IVDAAVATTT NGPSESSSSD EGSCKKPREE HIKSKISRVY VRTEASDTSL  180
IVKDGYQWRK YGQKVTRDNP SPRAYFKCSF APSCPVKKKV KEAXEDQSIL VATYEGEHNH  240
PHPSKMENTS TTSKCCVTTT IGSVPCSTSL SSSGGGPTIT LDLTKQKSHE TNPNPRKLES  300
PEFQHFLIEQ MASSLTKDPS FKAALAAAIS GKFLQHNNQT EKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-19167243174WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027167435.11e-159probable WRKY transcription factor 40
TrEMBLA0A2U9IY440.0A0A2U9IY44_CATRO; WRKY DNA-binding protein 40
STRINGcassava4.1_011696m1e-127(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450