PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13263_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 312aa    MW: 34951.8 Da    PI: 5.6758
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13263_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.72.4e-28155214159
                                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                           ++Dgy+WrKYGqK+ k+++ pr+Y++C++a +C+vkkkv+rs  +  +++ tYegeHnh+
  cra_locus_13263_iso_1_len_1125_ver_3 155 VKDGYHWRKYGQKVTKDNPSPRAYFKCSFApTCQVKKKVQRSVGNAAILVATYEGEHNHQ 214
                                           58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.373150216IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-27152216IPR003657WRKY domain
SuperFamilySSF1182906.15E-24153216IPR003657WRKY domain
SMARTSM007744.8E-32155215IPR003657WRKY domain
PfamPF031061.9E-22156214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
XLEDNSCLSL DLNFAPIQDS GDIARNTDFN GNDLDDESKL SEKENQSGNV IQQLNQIKKE  60
NKKLTEMLFL VCENYNVLQN HMMDLMQKSP GNSEVSTRKR KFEPENTIST YGNHDIASNI  120
ESICDDESPK RPKEIRTNIS KVLFRTDPDD KSLVVKDGYH WRKYGQKVTK DNPSPRAYFK  180
CSFAPTCQVK KKVQRSVGNA AILVATYEGE HNHQPPLQAD HHMLVASPQG AVTPLLTAAG  240
ANCSDFSMDT GIGNNRIQSR SFEENAVQNI MVEQMASSLT RNPSFTAALV AAISGRILSR  300
EYEYEYDTSA EK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-181542161374WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084416.11e-102probable WRKY transcription factor 40
TrEMBLK7PEY00.0K7PEY0_CATRO; WRKY18
STRINGcassava4.1_012109m4e-78(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45002242