PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13295_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 185aa    MW: 21056.3 Da    PI: 10.3811
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13295_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.76.8e-0735117588
                                 FAR1   5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek 72 
                                          e+A + G+ v++++skk       +   + C + g  ++++k+      +  ++r++ +  t+C  +l+ kke 
  cra_locus_13295_iso_5_len_931_ver_3  35 EFAISQGYVVTIKQSKKD------KVVVLGCDRGGVYRNRRKTvdetsgELARKRKSGSRLTNCPFELVGKKE- 101
                                          578888888888887776......456799*****99999999888886666777888889*******99998. PP

                                 FAR1  73 dgkwevtkleleHnHe 88 
                                          dg w++t  +  HnHe
  cra_locus_13295_iso_5_len_931_ver_3 102 DGLWVLTVKNGSHNHE 117
                                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-535118IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0004491Molecular Functionmethylmalonate-semialdehyde dehydrogenase (acylating) activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MVVTNFMEFT DTLQMLPPPP GSFIDREELI QHVGEFAISQ GYVVTIKQSK KDKVVVLGCD  60
RGGVYRNRRK TVDETSGELA RKRKSGSRLT NCPFELVGKK EDGLWVLTVK NGSHNHEALK  120
DLSEHPSARR FTEKEVLLIK EMTEAGLKPR QILKRLRQSN PELLSTPKHV YNIKAKLRQG  180
NMTGW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16783RRKTVDETSGELARKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112775.11e-119methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial-like isoform X1
TrEMBLA0A068TM101e-117A0A068TM10_COFCA; Uncharacterized protein
STRINGMigut.B00534.1.p1e-107(Erythranthe guttata)