PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13321_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 549aa    MW: 59520.8 Da    PI: 6.8621
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13321_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.31.8e-24232287359
                                           -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                           DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk +e+s++ ++v+ei+Y++ Hnh+
  cra_locus_13321_iso_1_len_2125_ver_3 232 DGYNWRKYGQKQVKSPQGSRSYYRCTYSKCSAKK-IECSDNSNRVIEIVYRSCHNHD 287
                                           9*******************************98.*********************7 PP
2WRKY955.3e-30405461359
                                           -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                           Dgy+WrKYGqK+vkg+++pr+YYrCtsagC+v+k++e ++++ + v+itY+g+H+h+
  cra_locus_13321_iso_1_len_2125_ver_3 405 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCTVRKHIEMAKDNSNGVIITYKGRHDHD 461
                                           9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-21224289IPR003657WRKY domain
PROSITE profilePS5081118.682225289IPR003657WRKY domain
SuperFamilySSF1182903.14E-20226289IPR003657WRKY domain
SMARTSM007744.4E-22230288IPR003657WRKY domain
PfamPF031061.7E-18232287IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-30389463IPR003657WRKY domain
PROSITE profilePS5081132.179398463IPR003657WRKY domain
SuperFamilySSF1182901.96E-26399463IPR003657WRKY domain
SMARTSM007746.3E-34403462IPR003657WRKY domain
PfamPF031065.9E-23405460IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
XTVESSLSSS HFTFPLSLTI TIHAPLCAVN QAMDDGNNSK GEVGLKENIE ETLQLAENSN  60
SKPKENFGEE FGCVDGKDSD KQSREFEGNG SIPVAGEEEM NTRASSPPKT LAEVPSASND  120
LHCNFEVPVV YDLQTFEAEE NKDHISVSKQ GDLKDAKDQA APAQRQREQK SPDGPFSSEL  180
SPSSVVQSIS SIQSLPEQGP IPVENRNLSC VPVMKQSLKP FSVPAQKTPY PDGYNWRKYG  240
QKQVKSPQGS RSYYRCTYSK CSAKKIECSD NSNRVIEIVY RSCHNHDPPE KLNSNRGSKG  300
ALSVVPVNGI DPSVHPVGAL DDAAPSSSSK DPGREAPPVM ESREQDSRGC EENPGSDVKQ  360
EPLNEPETRK RLKKSVSSCS EPSSKPGKDP KYVVHAAGDV GISGDGYRWR KYGQKMVKGN  420
PHPRNYYRCT SAGCTVRKHI EMAKDNSNGV IITYKGRHDH DMPVPKKHHG PPSVPLIAAS  480
ASSPASVNTS QVTKSETCQD QVSAARWSAD KEGGELTSKP SETGGEKAME SARTLLSIGF  540
EIKPCSGSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-24394463877Probable WRKY transcription factor 4
2lex_A3e-24394463877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027072907.10.0probable WRKY transcription factor 32 isoform X1
SwissprotP595831e-109WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLK7PFQ70.0K7PFQ7_CATRO; WRKY32
STRINGSolyc07g005650.2.11e-142(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91892127