PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1333_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family TCP
Protein Properties Length: 390aa    MW: 43541.5 Da    PI: 7.9029
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1333_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.11.3e-37822181100
                                  TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......... 65 
                                          a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+ l ++         
  cra_locus_1333_iso_1_len_1504_ver_3  82 ATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKTAIDRLSQSsmdpiiitt 155
                                          589**************************************************************888888877 PP

                                  TCP  66 ........ssssa.....sec....eaesssssasnsssg......................kaaksaakskks 100
                                                  +   +     s c    ++++++++      +                      +   +++ks ++
  cra_locus_1333_iso_1_len_1504_ver_3 156 pteednidN---SnpvpgSVCqvqlQQQQQQQQP-----QhgssswnydlviggpvesnnniS---DSMKSFFP 218
                                          766664431...1333445555332222222222.....122445777777777777764431...33333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-3383187IPR005333Transcription factor, TCP
PROSITE profilePS5136933.14985143IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
XAATSEKFPL SKKRFYFFLG RGLNLDFQWD NYNNYNNNQG EGYANRGATA GARSRMKRGG  60
GRAGAGGGGE IIQVQGGHII RATGRKDRHS KVYTAKGPRD RRVRLSAHTA IQFYDVQDRL  120
GYDRPSKAVD WLINKAKTAI DRLSQSSMDP IIITTPTEED NIDNSNPVPG SVCQVQLQQQ  180
QQQQQPQHGS SSWNYDLVIG GPVESNNNIS DSMKSFFPMT TSSDQNSLMN FQRISRDGIH  240
NQNNGDLGLS LQTLQQDQNL NPVVQFQANF AKNEAWNAGG EEGENRNVGF ILNSNSMPYN  300
YTQNSSSSSS AAXXXXLLRE PLQSNNINYS HLIIPSWNID QRQFPPSHHH VDIHQSSSFY  360
GVHFDSNFQI PTQIHAEEQP SSVSPTSQQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2190143154Putative transcription factor PCF6
5zkt_B3e-2190143154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257RSRMKR
25967GGRAGAGGG
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063409.12e-76transcription factor PCF5-like
RefseqXP_027063410.12e-76transcription factor PCF5-like
RefseqXP_027127404.12e-76transcription factor PCF5-like
RefseqXP_027127405.12e-76transcription factor PCF5-like
SwissprotO822772e-44TCP10_ARATH; Transcription factor TCP10
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]