PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1333_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

TCP

Protein Properties

Length: 316aa MW: 34951.8 Da PI: 9.424

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1333_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	120.1	2.7e-37	82	213	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......... 65 a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+ l ++ cra_locus_1333_iso_2_len_946_ver_3 82 ATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKTAIDRLSQSsmdpiiittp 156 589**************************************************************8888888776 PP TCP 66 .......ssssa.....seceaesssssasnsssg.........................k 89 + + s c +++ +++++++ + cra_locus_1333_iso_2_len_946_ver_3 157 teednidN---SnpvpgSVC-QVQLQQQQQQQXXXxhnxgssswnydlviggpvesnnniS 213 66654431...222233344.3333333333322244555666666666666666663331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.7E-33	83	186	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.149	85	143	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
XAATSEKFPL SKKRFYFFLG RGLNLDFQWD NYNNYNNNQG EGYANRGATA GARSRMKRGG 60 GRAGAGGGGE IIQVQGGHII RATGRKDRHS KVYTAKGPRD RRVRLSAHTA IQFYDVQDRL 120 GYDRPSKAVD WLINKAKTAI DRLSQSSMDP IIITTPTEED NIDNSNPVPG SVCQVQLQQQ 180 QQQQXXXXHN XGSSSWNYDL VIGGPVESNN NISDSMKSFF PMTTSSDQNS LMNFQRISRD 240 GIHNQNNGDL GLSLQTLQQD QNLNPVVQFQ ANFAKNEAWN AGGEEGENRN VGFILNSNSM 300 PYNYTQNSSS SSSAAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-21	90	143	1	54	Putative transcription factor PCF6
5zkt_B	1e-21	90	143	1	54	Putative transcription factor PCF6
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	57	RSRMKR
2	59	67	GGRAGAGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027063409.1	1e-61	transcription factor PCF5-like
Refseq	XP_027063410.1	1e-61	transcription factor PCF5-like
Refseq	XP_027127404.1	1e-61	transcription factor PCF5-like
Refseq	XP_027127405.1	1e-61	transcription factor PCF5-like
Refseq	XP_027170318.1	1e-61	transcription factor PCF5-like
Refseq	XP_027170319.1	1e-61	transcription factor PCF5-like
Swissprot	O82277	2e-45	TCP10_ARATH; Transcription factor TCP10

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]