PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1333_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family TCP
Protein Properties Length: 200aa    MW: 22474.9 Da    PI: 10.4441
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1333_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.91.5e-37821941113
                                  TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasece 74 
                                          a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+ l ++s ++   ++
  cra_locus_1333_iso_3_len_1512_ver_3  82 ATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKTAIDRLSQSSMDPIIITT 155
                                          589**************************************************************777775554 PP

                                  TCP  75 aesssssasnsssgkaaksaakskksqksaasalnlake 113
                                          + ++ + ++++  + +  + + ++++q++    +n+ ++
  cra_locus_1333_iso_3_len_1512_ver_3 156 PTEEDNIDNSNPVPGSVCQVQLQQQQQQQXXXXHNMVHH 194
                                          444444444444444444444444444444445555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-3383184IPR005333Transcription factor, TCP
PROSITE profilePS5136933.14985143IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
XAATSEKFPL SKKRFYFFLG RGLNLDFQWD NYNNYNNNQG EGYANRGATA GARSRMKRGG  60
GRAGAGGGGE IIQVQGGHII RATGRKDRHS KVYTAKGPRD RRVRLSAHTA IQFYDVQDRL  120
GYDRPSKAVD WLINKAKTAI DRLSQSSMDP IIITTPTEED NIDNSNPVPG SVCQVQLQQQ  180
QQQQXXXXHN MVHHHGIMIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-2290143154Putative transcription factor PCF6
5zkt_B8e-2290143154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257RSRMKR
25967GGRAGAGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2I7ZAU31e-44A0A2I7ZAU3_SESPO; TCP family protein
STRINGXP_009357156.12e-45(Pyrus x bretschneideri)