PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1333_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

TCP

Protein Properties

Length: 186aa MW: 20761.8 Da PI: 10.4441

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1333_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.7	7.1e-37	82	183	1	101
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......... 65 a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+ l ++ cra_locus_1333_iso_4_len_557_ver_3 82 ATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKTAIDRLSQSsmdpiiittp 156 589**************************************************************5555555444 PP TCP 66 .......ssssa.....seceaesssssasnsssgkaaksaakskksq 101 + + s c +++ +++++ q cra_locus_1333_iso_4_len_557_ver_3 157 teednidN---SnpvpgSVC-QVQLQQQQQ-----------------Q 183 44432220...111222222.222222222.................2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.5E-33	83	178	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.149	85	143	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
XAATSEKFPL SKKRFYFFLG RGLNLDFQWD NYNNYNNNQG EGYANRGATA GARSRMKRGG 60 GRAGAGGGGE IIQVQGGHII RATGRKDRHS KVYTAKGPRD RRVRLSAHTA IQFYDVQDRL 120 GYDRPSKAVD WLINKAKTAI DRLSQSSMDP IIITTPTEED NIDNSNPVPG SVCQVQLQQQ 180 QQQQQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	5e-22	90	143	1	54	Putative transcription factor PCF6
5zkt_B	5e-22	90	143	1	54	Putative transcription factor PCF6
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	57	RSRMKR
2	59	67	GGRAGAGGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2I7ZAU3	3e-45	A0A2I7ZAU3_SESPO; TCP family protein
STRING	XP_009357156.1	4e-46	(Pyrus x bretschneideri)