PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13388_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

CO-like

Protein Properties

Length: 516aa MW: 57869.2 Da PI: 6.2079

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13388_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.3	1.8e-09	19	62	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++ +k+++++C +++ +lC++C + H+ H++v cra_locus_13388_iso_1_len_1898_ver_3 19 ARACDNCIKKRARWYCPSDDAFLCQSCDASVHSAnplarrHERV 62 578*****************************657888888876 PP
2	CCT	68.1	2.3e-23	461	504	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ cra_locus_13388_iso_1_len_1898_ver_3 461 REARVLRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 504 9*****************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.978	17	64	IPR000315	B-box-type zinc finger
SMART	SM00336	4.1E-11	17	64	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.2E-7	19	62	IPR000315	B-box-type zinc finger
CDD	cd00021	6.48E-9	20	64	No hit	No description
Pfam	PF06203	7.6E-18	461	503	IPR010402	CCT domain
PROSITE profile	PS51017	16.152	461	503	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0016020	Cellular Component	membrane
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MVSSDNNKKL ANAVGGKTAR ACDNCIKKRA RWYCPSDDAF LCQSCDASVH SANPLARRHE 60 RVRLKTSSSI KTASSSSSSS KNSLLDDQIS SSFPSWHHGF TKKARTPRQG SKNSKLLAAI 120 TRRNPLHHLV PEICSDENSQ EENDEQLILY RVPICDENSN EAAGFVEHCA RDIHHATNRI 180 SICDPFARNS NETGHYGRGI QHATNAFPIC DENSNEATIV AGHCACDIYH ATNDGLGAES 240 KSINDSNQLH GSLPTELELA EFAADVESLL GKGLDDEYRF DMEGLGLSEE KEFKKQSFFG 300 YGKVVKVKEE MGINNSSNNN NNDDDEVILD GGEIDLERET FELNFDYDAS PMQCELEEIK 360 AENDHFHKEI MLCSEDCKVD NNYDSHVNNS SGTNKKKILL RLDYEGVIAA WDDQKSPWTT 420 GDRPELDSGD CWPDCLGICG SVHPYGEGIM LGHASIMDGG REARVLRYRE KRRTRLFSKK 480 IRYEVRKLNA EKRPRMKGRF VKRTNFSANV FPLQNK

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MVSSDNNKKL ANAVGGKTAR ACDNCIKKRA RWYCPSDDAF LCQSCDASVH SANPLARRHE  60
RVRLKTSSSI KTASSSSSSS KNSLLDDQIS SSFPSWHHGF TKKARTPRQG SKNSKLLAAI  120
TRRNPLHHLV PEICSDENSQ EENDEQLILY RVPICDENSN EAAGFVEHCA RDIHHATNRI  180
SICDPFARNS NETGHYGRGI QHATNAFPIC DENSNEATIV AGHCACDIYH ATNDGLGAES  240
KSINDSNQLH GSLPTELELA EFAADVESLL GKGLDDEYRF DMEGLGLSEE KEFKKQSFFG  300
YGKVVKVKEE MGINNSSNNN NNDDDEVILD GGEIDLERET FELNFDYDAS PMQCELEEIK  360
AENDHFHKEI MLCSEDCKVD NNYDSHVNNS SGTNKKKILL RLDYEGVIAA WDDQKSPWTT  420
GDRPELDSGD CWPDCLGICG SVHPYGEGIM LGHASIMDGG REARVLRYRE KRRTRLFSKK  480
IRYEVRKLNA EKRPRMKGRF VKRTNFSANV FPLQNK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	471	487	RRTRLFSKKIRYEVRKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027098578.1	1e-161	zinc finger protein CONSTANS-LIKE 16-like
TrEMBL	A0A068TXH2	1e-156	A0A068TXH2_COFCA; Uncharacterized protein
STRING	XP_009627333.1	1e-147	(Nicotiana tomentosiformis)