PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13469_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 324aa MW: 36055.4 Da PI: 7.1416

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13469_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.4e-05	173	192	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ cra_locus_13469_iso_3_len_969_ver_3 173 FSCPLCFKTFNRYNNMQMHM 192 89*****************9 PP
2	zf-C2H2	14.7	9e-05	257	279	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ cra_locus_13469_iso_3_len_969_ver_3 257 FMCRKCGKAFAVRGDWRTHEKNC 279 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.61	173	195	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.66	173	200	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.7E-5	173	192	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.1E-7	173	195	No hit	No description
PROSITE pattern	PS00028	0	175	195	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.1E-7	252	277	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.8E-5	255	277	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	49	257	277	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.808	257	277	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
XKPSSSSSSS SLYPNNNFNF YYSNTNNINY NYHHHHQYSS SSSPPSPPIR EALPLLGSSP 60 ARPDPAPAPE DQDSSSSAME VESFSACDGD HDDTVTVALN LGLPNHHPSS LISSDHHADL 120 ISSALISSST DHITDQLEVA ANGILTQAPA STLHKGQYWI PTPAQILIGP TQFSCPLCFK 180 TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTAMLRLPCY CCAAGCRNNI DHPRAKPLKD 240 FRTLQHIIKE NMXIKPFMCR KCGKAFAVRG DWRTHEKNCG KLWYCTCGSD FKHKRSLKDH 300 IKAFGNGHAA YGIDSFEEEE EEDX

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00197	DAP	Transfer from AT1G51220	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021278475.1	1e-142	zinc finger protein WIP2-like
Swissprot	Q8W031	1e-124	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A0A061GTW4	1e-140	A0A061GTW4_THECC; C2H2-type zinc finger family protein
STRING	EOY32602	1e-141	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]