PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13647_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 244aa MW: 27488.4 Da PI: 8.9639

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13647_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.1	9.7e-06	133	171	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L cra_locus_13647_iso_1_len_1117_ver_3 133 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSETIEYIKFL 171 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.601	122	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-12	132	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.87E-7	132	175	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.4E-10	132	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0092	133	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
QFSSHNNNQV ADSNVLQGFL VSPDNNQQSI NYNSYVPSSG YDHHHHHHPR PWSATFLNNT 60 PFWNASAPAG SNDGRSSFFP SLRTHQQPAP TFDDKPKQIT SEVRELGNKT SSEVSNKRPR 120 NETTPSSMPA FKVRKEKMGD RITALQQLVS PFGKTDTASV LSETIEYIKF LHEQVNVLSN 180 PYMKSGAHIQ HHQQNPEKSI KDPEGPKQDL RSRGLCLVPV PNTFPVINEP NLDFWNPTFG 240 GTYR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020553877.1	3e-90	transcription factor bHLH123
Swissprot	Q8GXT3	1e-59	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A061F6M7	3e-83	A0A061F6M7_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRING	XP_009377291.1	2e-85	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]