PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1368_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 298aa    MW: 33818 Da    PI: 5.5053
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1368_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.71.3e-11126173149
                                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 
                                          lp GfrF P d el+ +yL kk+++ +l+  ++ik+v++y+++P++L +
  cra_locus_1368_iso_1_len_1263_ver_3 126 LPSGFRFCPYDIELIRDYLMKKIAHPQLNW-DHIKQVQLYDCDPSQLAA 173
                                          699**************************9.89**************74 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-22116255IPR003441NAC domain
PfamPF023653.1E-8127220IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
TTTTTTTTTT TTTTTTHSET NYTHNNINDH QYILGQPTLA SSGGGGEIGG IAALDNYSLF  60
GDQQGHDHDI INNINIDHCM SGFYDHENLF LDQYYEPIQA VPVSDVPDVH VHVVNNNNIN  120
NERMMLPSGF RFCPYDIELI RDYLMKKIAH PQLNWDHIKQ VQLYDCDPSQ LAACYPNDEG  180
IEIGNKRPLV FYQGKHKDNR ERSSKEEPKK TDWIMYEYQV HDPTTTTSNS NRRKRDEFEN  240
TTMRLDGXVL CKISRSGRSF KSQENERNNV KAEAIPSTSY PTNIENILAA AAGSNPSY