PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1368_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 1123aa    MW: 127478 Da    PI: 6.7173
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1368_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.13.4e-4091010451128
                                  NAM    1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk 72  
                                           lp GfrF P d el+ +yL kk+++ +l+  ++ik+v++y+++P++L +++ ++e ewyfF++rdk+y++g+
  cra_locus_1368_iso_4_len_3737_ver_3  910 LPSGFRFCPYDIELIRDYLMKKIAHPQLNW-DHIKQVQLYDCDPSQLAACYPNDEGEWYFFTERDKRYPNGE 980 
                                           699**************************9.89**************988888888**************** PP

                                  NAM   73 rknratksgyWkatgkdkevlskkgelvglkktLvfy.........kgrapkgektdWvmheyrl 128 
                                           r+nr+t+sgyWkatg  +++++++g ++g k+ Lvfy         + ++++++ktdW+m ey++
  cra_locus_1368_iso_4_len_3737_ver_3  981 RPNRSTRSGYWKATGARRKIVDNEGIEIGNKRPLVFYqgkhkdnreRSSKEEPKKTDWIMYEYQV 1045
                                           *************************************77776665546778889*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.102.4E-11172402IPR011990Tetratricopeptide-like helical domain
SMARTSM00028300243276IPR019734Tetratricopeptide repeat
SMARTSM00028180292325IPR019734Tetratricopeptide repeat
SuperFamilySSF484523.8E-20309453IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS500055.546334367IPR019734Tetratricopeptide repeat
SMARTSM0002845334367IPR019734Tetratricopeptide repeat
PfamPF133740.018340372IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS500055.458416449IPR019734Tetratricopeptide repeat
Gene3DG3DSA:1.25.40.105.0E-22427666IPR011990Tetratricopeptide-like helical domain
SMARTSM00028230454487IPR019734Tetratricopeptide repeat
SuperFamilySSF484523.8E-20494570IPR011990Tetratricopeptide-like helical domain
SMARTSM0002815496529IPR019734Tetratricopeptide repeat
PROSITE profilePS5029311.888496654IPR013026Tetratricopeptide repeat-containing domain
PROSITE profilePS500058.614496529IPR019734Tetratricopeptide repeat
SMARTSM0002863537570IPR019734Tetratricopeptide repeat
PROSITE profilePS500055.281537570IPR019734Tetratricopeptide repeat
SuperFamilySSF484521.39E-14540656IPR011990Tetratricopeptide-like helical domain
PfamPF134248.9E-9547608No hitNo description
SMARTSM0002841579612IPR019734Tetratricopeptide repeat
PROSITE profilePS500056.667579612IPR019734Tetratricopeptide repeat
PROSITE profilePS500056.048621654IPR019734Tetratricopeptide repeat
SMARTSM0002812621654IPR019734Tetratricopeptide repeat
PfamPF131810.0049622649IPR019734Tetratricopeptide repeat
SuperFamilySSF1019413.01E-439001080IPR003441NAC domain
PROSITE profilePS5100542.6069101081IPR003441NAC domain
PfamPF023653.4E-209111045IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1123 aa     Download sequence    Send to blast
XNRDRRRRQR NGYNRDRRPR GRQREPRQTP ASPSCSAVLQ NLKKKVFQRV LPGGEHLLYR  60
TEFLGSKSTM KRVQSKLIPA LQQLTRTSFS FLERDSVFHF SSVSSHSIVN EPSQSYSSET  120
HPKPCTKTPA LLFSNAKGRQ SLQNFNSLAD QAPSSHQMSS RQRKVLERSQ LEEAFESAET  180
TEEMLKAFED MQANFDEMGL GLACLKLGLK LDQEGEDPEK AFSFANRALN VLDKDDKPTL  240
PLAMTLQLLG SVSFSLQKFS DSLGYLNRAN RILGRLSEEG SFSYEDIGPV IHAVQSELFN  300
TKTAMGRREE AIANLRMAVD IKEKMLGKDS KELGKANRDV ARAYVAVLNF KEALTFCLKA  360
LDIHKSLFGH NSVEVAHDRK LLGDIYTGLE EHETALEQNE LSQRVLKNWG CHSELLRAEI  420
DASNMQIALG RYDEAINTLK SVVQKTDKES EDRSMIFISM AKALCNQEKF SDSKRCLEIA  480
SGILEKKVAS LPVVVAEAFI EISMLYETMN EFETAISLLR RALVMVEKIP EEQHSVGSVS  540
ARIGWLLLLT GKVEQAIPYL EDAAERLKES FGSKHYGVGY VYNNLGAAYL ELDRPQSAAQ  600
VFAYAREIMD VSLGPHHADS IEACQNLSKA YAAMGSYQLA INFQEKVIEA WEGHGQSAED  660
ELKEAHRLLE QVKKKAVDAS SNESLMEAFP LAHLTEGAST SKSXKWYLSW SSRFKMNMNL  720
IIYGKGAEXD YTIFVLVCFL LQFKALMYLE TXFLWGMSPL PQPDFWEDKF INRWEVDLGK  780
EQVIVHRTXX NAQDMWDLER SFAGKMRSEF SSKLKPGNGQ PTLASSGGGG EIGGIAALDN  840
YSLFGDQQGH DHDIINNINI DHCMSGFYDH ENLFLDQYYE PIQAVPVSDV PDVHVHVVNN  900
NNINNERMML PSGFRFCPYD IELIRDYLMK KIAHPQLNWD HIKQVQLYDC DPSQLAACYP  960
NDEGEWYFFT ERDKRYPNGE RPNRSTRSGY WKATGARRKI VDNEGIEIGN KRPLVFYQGK  1020
HKDNRERSSK EEPKKTDWIM YEYQVHDPTT TTSNSNRRKR DEFENTTMRL DGXVLCKISR  1080
SGRSFKSQEN ERNNVKAEAI PSTSYPTNIE NILAAAAGSN PSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-32907108014164NO APICAL MERISTEM PROTEIN
1ut4_B5e-32907108014164NO APICAL MERISTEM PROTEIN
1ut7_A5e-32907108014164NO APICAL MERISTEM PROTEIN
1ut7_B5e-32907108014164NO APICAL MERISTEM PROTEIN
3swm_A7e-32907108017167NAC domain-containing protein 19
3swm_B7e-32907108017167NAC domain-containing protein 19
3swm_C7e-32907108017167NAC domain-containing protein 19
3swm_D7e-32907108017167NAC domain-containing protein 19
3swp_A7e-32907108017167NAC domain-containing protein 19
3swp_B7e-32907108017167NAC domain-containing protein 19
3swp_C7e-32907108017167NAC domain-containing protein 19
3swp_D7e-32907108017167NAC domain-containing protein 19
4dul_A5e-32907108014164NAC domain-containing protein 19
4dul_B5e-32907108014164NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027151617.10.0protein KINESIN LIGHT CHAIN-RELATED 1
TrEMBLA0A068U6330.0A0A068U633_COFCA; Uncharacterized protein
STRINGXP_009790958.10.0(Nicotiana sylvestris)