PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1368_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 178aa MW: 20651.7 Da PI: 9.2865

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1368_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	84	3.1e-26	16	100	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy.........kgrapkge 117 ++e ewyfF++rdk+y++g+r+nr+t+sgyWkatg +++++++g ++g k+ Lvfy + ++++++ cra_locus_1368_iso_6_len_1138_ver_3 16 NDEGEWYFFTERDKRYPNGERPNRSTRSGYWKATGARRKIVDNEGIEIGNKRPLVFYqgkhkdnreRSSKEEPK 89 4566***************************************************77776665546778889 PP NAM 118 ktdWvmheyrl 128 ktdW+m ey++ cra_locus_1368_iso_6_len_1138_ver_3 90 KTDWIMYEYQV 100 *******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	30.561	1	136	IPR003441	NAC domain
SuperFamily	SSF101941	3.92E-27	15	135	IPR003441	NAC domain
Pfam	PF02365	3.5E-13	21	100	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MELLLIISFC AACYPNDEGE WYFFTERDKR YPNGERPNRS TRSGYWKATG ARRKIVDNEG 60 IEIGNKRPLV FYQGKHKDNR ERSSKEEPKK TDWIMYEYQV HDPTTTTSNS NRRKRDEFEN 120 TTMRLDGXVL CKISRSGRSF KSQENERNNV KAEAIPSTSY PTNIENILAA AAGSNPSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-23	18	135	70	164	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-23	18	135	70	164	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-23	18	135	70	164	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-23	18	135	70	164	NO APICAL MERISTEM PROTEIN
3swm_A	2e-23	18	135	73	167	NAC domain-containing protein 19
3swm_B	2e-23	18	135	73	167	NAC domain-containing protein 19
3swm_C	2e-23	18	135	73	167	NAC domain-containing protein 19
3swm_D	2e-23	18	135	73	167	NAC domain-containing protein 19
3swp_A	2e-23	18	135	73	167	NAC domain-containing protein 19
3swp_B	2e-23	18	135	73	167	NAC domain-containing protein 19
3swp_C	2e-23	18	135	73	167	NAC domain-containing protein 19
3swp_D	2e-23	18	135	73	167	NAC domain-containing protein 19
4dul_A	1e-23	18	135	70	164	NAC domain-containing protein 19
4dul_B	1e-23	18	135	70	164	NAC domain-containing protein 19