PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1368_iso_8

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 339aa MW: 38795.4 Da PI: 6.1889

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1368_iso_8	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	132	4.2e-41	126	261	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lp GfrF P d el+ +yL kk+++ +l+ ++ik+v++y+++P++L +++ ++e ewyfF++rdk+y++g+r+ cra_locus_1368_iso_8_len_1386_ver_3 126 LPSGFRFCPYDIELIRDYLMKKIAHPQLNW-DHIKQVQLYDCDPSQLAACYPNDEGEWYFFTERDKRYPNGERP 198 699************************9.89**********988888888************** PP NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfy.........kgrapkgektdWvmheyrl 128 nr+t+sgyWkatg +++++++g ++g k+ Lvfy + ++++++ktdW+m ey++ cra_locus_1368_iso_8_len_1386_ver_3 199 NRSTRSGYWKATGARRKIVDNEGIEIGNKRPLVFYqgkhkdnreRSSKEEPKKTDWIMYEYQV 261 *******************************77776665546778889*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-44	116	296	IPR003441	NAC domain
PROSITE profile	PS51005	42.606	126	297	IPR003441	NAC domain
Pfam	PF02365	4.2E-21	127	261	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
TTTTTTTTTT TTTTTTHSET NYTHNNINDH QYILGQPTLA SSGGGGEIGG IAALDNYSLF 60 GDQQGHDHDI INNINIDHCM SGFYDHENLF LDQYYEPIQA VPVSDVPDVH VHVVNNNNIN 120 NERMMLPSGF RFCPYDIELI RDYLMKKIAH PQLNWDHIKQ VQLYDCDPSQ LAACYPNDEG 180 EWYFFTERDK RYPNGERPNR STRSGYWKAT GARRKIVDNE GIEIGNKRPL VFYQGKHKDN 240 RERSSKEEPK KTDWIMYEYQ VHDPTTTTSN SNRRKRDEFE NTTMRLDGXV LCKISRSGRS 300 FKSQENERNN VKAEAIPSTS YPTNIENILA AAAGSNPSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-34	123	300	14	168	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-34	123	300	14	168	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-34	123	300	14	168	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-34	123	300	14	168	NO APICAL MERISTEM PROTEIN
4dul_A	6e-34	123	300	14	168	NAC domain-containing protein 19
4dul_B	6e-34	123	300	14	168	NAC domain-containing protein 19