PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13691_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 203aa    MW: 22709.4 Da    PI: 8.3851
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13691_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.8e-18754253
                                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                                         +++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ +
  cra_locus_13691_iso_1_len_996_ver_3  7 RFRGVRQRH-WGSWVSEIRHP-----IlkTRIWLGTFETAEDAARAYDEAARLM 54
                                         69******9.**********8.....556*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.78E-35666No hitNo description
SMARTSM003805.8E-40770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-33764IPR001471AP2/ERF domain
PROSITE profilePS5103220.666764IPR001471AP2/ERF domain
PfamPF008474.8E-11754IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-20766IPR016177DNA-binding domain
PRINTSPR003671.1E-10819IPR001471AP2/ERF domain
PRINTSPR003671.1E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MARPQQRFRG VRQRHWGSWV SEIRHPILKT RIWLGTFETA EDAARAYDEA ARLMCGVRAR  60
TNFPYNPNSP PNTCSSKHLS ATLTAKLHKC YLTSLHHHHQ ISSSSSTTIN NTKHQHQIAA  120
AGSAITAANN HNHEAQENKP TMVVGHGQEQ IKTLEDDHIE QMIQELLHYG SIELCSVPTP  180
TFAIPPPPPH FSIDTHSLPP NSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-18664160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019416119.15e-75PREDICTED: protein PPLZ02-like
SwissprotQ94AW51e-73ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1J7H7R51e-73A0A1J7H7R5_LUPAN; Uncharacterized protein
TrEMBLA0A2N9FC129e-74A0A2N9FC12_FAGSY; Uncharacterized protein
STRINGXP_008377674.12e-73(Malus domestica)
STRINGXP_009758477.19e-73(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]