PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13700_iso_8

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HB-other

Protein Properties

Length: 413aa MW: 46172.9 Da PI: 7.4541

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13700_iso_8	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.9	1.3e-06	70	126	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + +s++e +e+++ g+t +qV+ +F +R + +k cra_locus_13700_iso_8_len_1794_ver_3 70 KRPRDLLNPKAIKYMQSIFSIKDAISKKETREISALFGVTATQVRDFFNSQRSRVRK 126 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-5	66	121	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.847	67	127	IPR001356	Homeobox domain
SMART	SM00389	0.0068	69	131	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.75E-6	69	129	IPR009057	Homeodomain-like
CDD	cd00086	4.04E-4	70	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MELLASENQL QLVVSESAKS LPDLLYSQRE LFRSQIDELE NIVLTQCKLT GVNPLSQEMA 60 AGALSIKIGK RPRDLLNPKA IKYMQSIFSI KDAISKKETR EISALFGVTA TQVRDFFNSQ 120 RSRVRKFIRL SREKADRSIS SKQMQEQQGE LPVNIDPNEP LNPVPLDSVA PISIEEAPTC 180 SKEDEALPAI DESDKHFVEN IFSLMRKEET FSGQVKLMEW ILQIQNSSVL FWFLTKGGIM 240 ILATWLSQAV VEEQTSVLNV ILKVLCHLPL QKALPVHMSA VLQSVNRLRF YRASGRGFCY 300 LDGAKHLPDP XALKKKNGTK SANDTQDEML LKQSINEVMG NGSWDSKIDL IEDGSTTLDE 360 ISGNIRKLES QPLKLLTASP DDTNKKLISG VRSSRILRIT GDEILISRIA SSS

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MELLASENQL QLVVSESAKS LPDLLYSQRE LFRSQIDELE NIVLTQCKLT GVNPLSQEMA  60
AGALSIKIGK RPRDLLNPKA IKYMQSIFSI KDAISKKETR EISALFGVTA TQVRDFFNSQ  120
RSRVRKFIRL SREKADRSIS SKQMQEQQGE LPVNIDPNEP LNPVPLDSVA PISIEEAPTC  180
SKEDEALPAI DESDKHFVEN IFSLMRKEET FSGQVKLMEW ILQIQNSSVL FWFLTKGGIM  240
ILATWLSQAV VEEQTSVLNV ILKVLCHLPL QKALPVHMSA VLQSVNRLRF YRASGRGFCY  300
LDGAKHLPDP XALKKKNGTK SANDTQDEML LKQSINEVMG NGSWDSKIDL IEDGSTTLDE  360
ISGNIRKLES QPLKLLTASP DDTNKKLISG VRSSRILRIT GDEILISRIA SSS

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027127357.1	0.0	homeobox protein LUMINIDEPENDENS-like
Swissprot	Q38796	1e-129	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A068U4N4	0.0	A0A068U4N4_COFCA; Uncharacterized protein
STRING	XP_009604664.1	1e-167	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]