PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13739_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 133aa MW: 14917.5 Da PI: 4.0943

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13739_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	60.7	4e-19	17	71	46	100
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++lpee+r da++s+vyeA+ar+rdPvyG++g i +lq+q++ l+aela++k+e cra_locus_13739_iso_4_len_1218_ver_3 17 FQELPEEQRADAVNSMVYEANARIRDPVYGCAGAICQLQKQISDLQAELAKAKAE 71 5899***********************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.44	1	72	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.0E-17	17	69	IPR004883	Lateral organ boundaries, LOB
Gene3D	G3DSA:1.20.58.60	9.9E-4	24	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MAATKQNXHY MMLADDFQEL PEEQRADAVN SMVYEANARI RDPVYGCAGA ICQLQKQISD 60 LQAELAKAKA EILNIQCQNE NLVSLICMGM SSHQHNNQEG EVMISEENNP ICENTSMFLD 120 DANLYAAWGP LWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-17	19	77	58	116	LOB family transfactor Ramosa2.1
5ly0_B	5e-17	19	77	58	116	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027086298.1	3e-55	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-31	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A068U726	6e-54	A0A068U726_COFCA; Uncharacterized protein
STRING	XP_009784336.1	2e-49	(Nicotiana sylvestris)