PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13802_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 215aa MW: 23800.9 Da PI: 6.5083

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13802_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.3	3.8e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAear 68 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++pe +r+++++sl+yeA+ r cra_locus_13802_iso_1_len_1325_ver_3 2 SCNGCRILRKGCNENCILRQSLqgiesPQSQANATVFVAKFFGRAGLMSFLSSVPEPQRPALFQSLLYEACGR 74 6********************************************************************** PP DUF260 69 ardPvyGavgvilklqqqleqlkaelall 97 + +Pv+Gavg++++++++++q++++++l+ cra_locus_13802_iso_1_len_1325_ver_3 75 TVNPVNGAVGLLWTGNWHVCQAAVDTVLR 103 ********************9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.051	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.3E-27	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSCNGCRILR KGCNENCILR QSLQGIESPQ SQANATVFVA KFFGRAGLMS FLSSVPEPQR 60 PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WHVCQAAVDT VLRGGVLRPM TEKPPPEDDT 120 VQENNVHISR LKDLMINSSR SKRNNGLEDD EIDGGLGLNL TSSFPARMTA GGRVKRRAPS 180 PEEESETTTS ESCFEYDYQN LEKDGQEKKL LRLFF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027112622.1	2e-93	LOB domain-containing protein 38-like
Refseq	XP_027159636.1	2e-93	LOB domain-containing protein 38-like
Swissprot	Q9SZE8	6e-69	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A2R6RH11	1e-88	A0A2R6RH11_ACTCH; LOB domain-containing protein
STRING	XP_009625187.1	1e-87	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90