PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13802_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family LBD
Protein Properties Length: 165aa    MW: 18367.6 Da    PI: 4.6348
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13802_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26036.41.4e-1112535697
                                DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelall 97
                                          ++++sl+yeA+ r+ +Pv+Gavg++++++++++q++++++l+
  cra_locus_13802_iso_2_len_1011_ver_3 12 ALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLR 53
                                          789********************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.9E-71250IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MSFNEIDVIC AALFQSLLYE ACGRTVNPVN GAVGLLWTGN WHVCQAAVDT VLRGGVLRPM  60
TEKPPPEDDT VQENNVHISR LKDLMINSSR SKRNNGLEDD EIDGGLGLNL TSSFPARMTA  120
GGRVKRRAPS PEEESETTTS ESCFEYDYQN LEKDGQEKKL LRLFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112622.18e-47LOB domain-containing protein 38-like
RefseqXP_027159636.18e-47LOB domain-containing protein 38-like
SwissprotQ9SZE83e-30LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A2Z7CUF35e-44A0A2Z7CUF3_9LAMI; LOB domain-containing protein 37-like
STRINGXP_009625187.19e-42(Nicotiana tomentosiformis)