PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14002_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 74aa MW: 7866.38 Da PI: 9.0834

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14002_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.2	2.8e-11	30	61	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg+WT+eEd ll+++++ +G g+W++ a++ g cra_locus_14002_iso_1_len_341_ver_3 30 RGPWTAEEDTLLIHYIASHGEGRWNLLAKRSG 61 89***************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.997	25	74	IPR017930	Myb domain
SuperFamily	SSF46689	4.59E-9	27	61	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-11	28	61	IPR009057	Homeodomain-like
Pfam	PF00249	2.2E-9	30	61	IPR001005	SANT/Myb domain
CDD	cd00167	5.79E-8	32	62	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
XSSSSSSLSK TTSSSSSSDD DGTGAGGLRR GPWTAEEDTL LIHYIASHGE GRWNLLAKRS 60 GNPIKPILLN LYKN

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00159	DAP	Transfer from AT1G25340	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010094742.1	1e-17	transcription factor MYB62
TrEMBL	A0A2U9IY79	1e-30	A0A2U9IY79_CATRO; MYB domain containing protein 116
STRING	XP_010094742.1	6e-17	(Morus notabilis)