PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1415_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 244aa MW: 27646.4 Da PI: 8.7303

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1415_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.8	2.4e-20	48	131	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 fY+eYA ++GF +r+ +s+ks+r+g+i++r + C ++++ + +++r + gC+a+l +k+ek g+ cra_locus_1415_iso_1_len_1599_ver_3 48 FYDEYAGRTGFITRVLSSRKSERDGSIISRGLGCRGISDSQKSGN----GSQKRDRRKEGCTAMLLIKREKPGR 117 9*******************************86666555554....588999999************ PP FAR1 76 wevtkleleHnHel 89 w v k+ +HnH+l cra_locus_1415_iso_1_len_1599_ver_3 118 WIVRKFLRDHNHSL 131 **********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-18	48	132	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MNVDMTADDG SRKTEASVCG EMGLCVTDNS REPYEGMVFD SEEAARAFYD EYAGRTGFIT 60 RVLSSRKSER DGSIISRGLG CRGISDSQKS GNGSQKRDRR KEGCTAMLLI KREKPGRWIV 120 RKFLRDHNHS LLVSLPKRRP TFDEKDKRIQ ELTAELRIKK RLSAAYHEQL LTIMKDVESH 180 NEHLSTKLQT VRDNLKKLDT TSFLSCFLFL FFQEMLPSNG SDAGKHAIFL DVDLENIHAI 240 VPAA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009605654.1	1e-105	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
Refseq	XP_018627619.1	1e-105	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
TrEMBL	A0A068UVU4	1e-103	A0A068UVU4_COFCA; Uncharacterized protein
STRING	XP_009605654.1	1e-104	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13099	17	18