PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1415_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 201aa MW: 22938 Da PI: 9.8536

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1415_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.4	1.6e-20	48	131	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkw 76 fY+eYA ++GF +r+ +s+ks+r+g+i++r + C ++++ + +++r + gC+a+l +k+ek g+w cra_locus_1415_iso_2_len_744_ver_3 48 FYDEYAGRTGFITRVLSSRKSERDGSIISRGLGCRGISDSQKSGN----GSQKRDRRKEGCTAMLLIKREKPGRW 118 9*******************************86666555554....588999999************* PP FAR1 77 evtkleleHnHel 89 v k+ +HnH+l cra_locus_1415_iso_2_len_744_ver_3 119 IVRKFLRDHNHSL 131 *********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-18	48	132	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MNVDMTADDG SRKTEASVCG EMGLCVTDNS REPYEGMVFD SEEAARAFYD EYAGRTGFIT 60 RVLSSRKSER DGSIISRGLG CRGISDSQKS GNGSQKRDRR KEGCTAMLLI KREKPGRWIV 120 RKFLRDHNHS LLVSLPKRRP TFDEKDKRIQ ELTAELRIKK RLSAAYHEQL LTIMKDVESH 180 NEHLSTKLQT VRDNLKKLDT T

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009605654.1	1e-106	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
Refseq	XP_018627619.1	1e-106	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
Refseq	XP_027121642.1	1e-105	protein FAR-RED IMPAIRED RESPONSE 1-like
Swissprot	Q9SZL8	4e-17	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A068UVU4	1e-104	A0A068UVU4_COFCA; Uncharacterized protein
STRING	XP_009605654.1	1e-105	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]