PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1415_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 204aa MW: 23344.5 Da PI: 9.9991

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1415_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.3	1.6e-20	48	131	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 fY+eYA ++GF +r+ +s+ks+r+g+i++r + C ++++ + +++r + gC+a+l +k+ek g+ cra_locus_1415_iso_3_len_1305_ver_3 48 FYDEYAGRTGFITRVLSSRKSERDGSIISRGLGCRGISDSQKSGN----GSQKRDRRKEGCTAMLLIKREKPGR 117 9*******************************86666555554....588999999************ PP FAR1 76 wevtkleleHnHel 89 w v k+ +HnH+l cra_locus_1415_iso_3_len_1305_ver_3 118 WIVRKFLRDHNHSL 131 **********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-18	48	132	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MNVDMTADDG SRKTEASVCG EMGLCVTDNS REPYEGMVFD SEEAARAFYD EYAGRTGFIT 60 RVLSSRKSER DGSIISRGLG CRGISDSQKS GNGSQKRDRR KEGCTAMLLI KREKPGRWIV 120 RKFLRDHNHS LLVSLPKRRP TFDEKDKRIQ ELTAELRIKK RLSAAYHEQL LTIMKDVESH 180 NEHLSTKLQT VRDNLKKLDT TRHI

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027121642.1	1e-106	protein FAR-RED IMPAIRED RESPONSE 1-like
Swissprot	Q9SZL8	5e-17	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A068UVU4	1e-105	A0A068UVU4_COFCA; Uncharacterized protein
STRING	XP_009605654.1	1e-105	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]