PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14216_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WOX
Protein Properties Length: 199aa    MW: 22438.9 Da    PI: 5.3657
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14216_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.2e-2098160157
                                          TT--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                             Homeobox   1 rrkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                          rr+R+++t++ql++Le++F k   ++p+ ++ +e++++l    +++e +V++WFqNrRa+ kk
  cra_locus_14216_iso_1_len_611_ver_3  98 RRQRWNPTPDQLHILERVFDKegIKTPNPQKVKEITAELanhgQISEPNVYNWFQNRRARLKK 160
                                          89******************8679************************************997 PP
2Wus_type_Homeobox91.76.9e-3098162265
                    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                           r+RW+Ptp+Q++iLe++++ +G++tPn +++++itaeL+++G+i++ NV++WFQNr+aR ++kq
  cra_locus_14216_iso_1_len_611_ver_3  98 RRQRWNPTPDQLHILERVFDkEGIKTPNPQKVKEITAELANHGQISEPNVYNWFQNRRARLKKKQ 162
                                          589****************989****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.14E-1791165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-1691169IPR009057Homeodomain-like
PROSITE profilePS5007114.98195161IPR001356Homeobox domain
SMARTSM003891.2E-1297165IPR001356Homeobox domain
CDDcd000861.46E-1298162No hitNo description
PfamPF000464.2E-1898160IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MERNKQLAAP PPCPPQPQAA AEELNGAGIY VKVMTDEQIE LLGKQIAAYA TISEQLEELH  60
RSLCCSQNDD QFSGGLMRIG NPYSTSLMAS NSSQKLSRRQ RWNPTPDQLH ILERVFDKEG  120
IKTPNPQKVK EITAELANHG QISEPNVYNW FQNRRARLKK KQMIESESNN EQSGEADHQK  180
VVVESLSGEE FCQQNDVVX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153161RRARLKKKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027121485.17e-56WUSCHEL-related homeobox 8-like
SwissprotQ5QMM31e-46WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A068V2Q12e-54A0A068V2Q1_COFCA; Uncharacterized protein
STRINGXP_006425279.11e-50(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2202022
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]