PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14316_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 229aa MW: 25628.3 Da PI: 5.0369

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14316_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.5	5.2e-39	10	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPv 73 +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r++a+ ++ yeA+ar++dP+ cra_locus_14316_iso_1_len_930_ver_3 10 PCGACKFLRRKCVRGCVFAPYFAHEQgATHFAAIHKVFGASNVSKLLAHLPVTDRSEAAVTISYEAQARLQDPI 83 7***********************89****************************************** PP DUF260 74 yGavgvilklqqqleqlkaelallkee 100 yG+v+ i++lqqq+ +l+a+la lke+ cra_locus_14316_iso_1_len_930_ver_3 84 YGCVSQIFALQQQVVSLQAQLACLKEQ 110 ********************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.375	9	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-37	10	108	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010311	Biological Process	lateral root formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MTGGSGGGSP CGACKFLRRK CVRGCVFAPY FAHEQGATHF AAIHKVFGAS NVSKLLAHLP 60 VTDRSEAAVT ISYEAQARLQ DPIYGCVSQI FALQQQVVSL QAQLACLKEQ AAQCLNNNMS 120 TTNPNEKFLS YNSSYCPNDV QSWFHSENSN TNPQFDPYYG KGSIENNNNF QYFGENNNIM 180 MSSSSNSDQE QMMECFVERE TEKEQWGLAD DDEMDDLQSV AFRYIHHQH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-36	5	104	6	104	LOB family transfactor Ramosa2.1
5ly0_B	6e-36	5	104	6	104	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269\|PubMed:17259263}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631, ECO:0000269\|PubMed:17259263}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025015760.1	3e-90	LOB domain-containing protein 29
Swissprot	Q9M2J7	1e-65	LBD29_ARATH; LOB domain-containing protein 29
TrEMBL	B9T847	6e-89	B9T847_RICCO; LOB domain-containing protein, putative
STRING	XP_002534416.1	1e-89	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8446	22	30

Publications ? help Back to Top
Gupta A,Singh M,Laxmi A Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis. Plant Physiol., 2015. 168(1): p. 307-20 [PMID:25810094] Porco S, et al. Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3. Development, 2016. 143(18): p. 3340-9 [PMID:27578783] Lee K,Seo PJ High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis. Planta, 2017. 246(4): p. 797-802 [PMID:28766014] Xu C,Cao H,Xu E,Zhang S,Hu Y Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation. Plant Cell Physiol., 2018. 59(4): p. 744-755 [PMID:29121271] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]