PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14377_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 268aa MW: 30387.7 Da PI: 4.7801

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14377_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	26	71	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+ ++v+++ +lG++ W++I+++++ gRt++++k++w+++l cra_locus_14377_iso_5_len_2319_ver_3 26 RGPFSPEEENIIVRLHSMLGNK-WAAISSHLP-GRTDNEIKNFWNSHL 71 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.298	1	20	IPR017877	Myb-like domain
SuperFamily	SSF46689	3.59E-22	7	76	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.0E-11	7	32	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.483	21	75	IPR017930	Myb domain
SMART	SM00717	2.9E-17	25	73	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-16	26	71	IPR001005	SANT/Myb domain
CDD	cd00167	3.37E-12	28	71	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.5E-23	33	72	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
IIAGLLRCGK SCRLRWTNYL RPDIKRGPFS PEEENIIVRL HSMLGNKWAA ISSHLPGRTD 60 NEIKNFWNSH LKKRATASMD QSSYQPSFFS ESSDDANLES QSTQHMVQWE RATLEAEIQL 120 SKDPLLLNSQ SAVKTENDYF LRLWNSEVGE SFRKVNDYEV ACQSPVSQVS SSTRDESSSG 180 VTIHTNDPPR VLLSPARTTN TQKHAENVSV KKDPEDHLIL GSESSKSYEL DESSDATMKL 240 LLDFPQGDEM EYLQEPVEDV SIYLQDPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-20	7	75	40	108	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027103808.1	1e-116	transcription factor MYB41-like
Refseq	XP_027103809.1	1e-116	transcription factor MYB41-like
TrEMBL	A0A068UAM3	1e-112	A0A068UAM3_COFCA; Uncharacterized protein
STRING	XP_010273102.1	7e-84	(Nelumbo nucifera)