PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14386_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 251aa    MW: 26083.3 Da    PI: 8.6601
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14386_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.11.7e-095681227
                                         -S---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                         kt++C++f     Ck+Gd+C+FaHg+
  cra_locus_14386_iso_1_len_993_ver_3 56 KTKICSRFNTAEGCKFGDKCHFAHGE 81
                                         89**********************96 PP
2zf-CCCH37.73.5e-12218242126
                                          --S---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                          ykt+lC +fa+ G C +G+rC+FaHg
  cra_locus_14386_iso_1_len_993_ver_3 218 YKTKLCENFAK-GSCTFGERCHFAHG 242
                                          9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.901118IPR000571Zinc finger, CCCH-type
PfamPF146080.87415No hitNo description
Gene3DG3DSA:4.10.1000.104.0E-135284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-85384IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7425482IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-45481IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-65681IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.8E-15117193IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.9E-16121192IPR004088K Homology domain, type 1
SMARTSM003223.0E-12122192IPR004087K Homology domain
PROSITE profilePS5008414.278123187IPR004088K Homology domain, type 1
PfamPF000131.2E-11125189IPR004088K Homology domain, type 1
CDDcd001052.74E-14125187No hitNo description
Gene3DG3DSA:4.10.1000.109.0E-17212248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-9215247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.746217244IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-7217243IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9218242IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
XTAGCQFGES CHFLHYVPGG YNAVAQMMNL TPAPASRNAV ATPSIPNGAS GSPAVKTKIC  60
SRFNTAEGCK FGDKCHFAHG EWEIGKPIIP WHEDPRAMGP GPGRFGGRME PAVPGPAAGF  120
GASATTKISV DASLAGGIIG KSGVNSKQIC RQTGAKLAIR DHESDPNLRN IELEGTFEQI  180
QQASAMVREL IASLGSSVVG LGRASGGPGG PPPQMSNYKT KLCENFAKGS CTFGERCHFA  240
HGAAELRKSG V
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245694.11e-146PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R08e-94C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1J6IEQ91e-144A0A1J6IEQ9_NICAT; Zinc finger ccch domain-containing protein 14
STRINGXP_009780696.11e-144(Nicotiana sylvestris)