PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14386_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 295aa    MW: 30825.3 Da    PI: 8.4268
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14386_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.86e-063659225
                                          -S---SGGGGTS--TTTTT-SS-S CS
                               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                                          k ++C  f+ t  C++G++C+F H
  cra_locus_14386_iso_2_len_1126_ver_3 36 KSKPCTKFFSTAGCQFGESCHFLH 59
                                          7789******************** PP
2zf-CCCH28.82.1e-09100125227
                                           -S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                           kt++C++f     Ck+Gd+C+FaHg+
  cra_locus_14386_iso_2_len_1126_ver_3 100 KTKICSRFNTAEGCKFGDKCHFAHGE 125
                                           89**********************96 PP
3zf-CCCH37.44.4e-12262286126
                                           --S---SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                           ykt+lC +fa+ G C +G+rC+FaHg
  cra_locus_14386_iso_2_len_1126_ver_3 262 YKTKLCENFAK-GSCTFGERCHFAHG 286
                                           9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.83461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.1083462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-53560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-73659IPR000571Zinc finger, CCCH-type
PfamPF146080.434259No hitNo description
Gene3DG3DSA:4.10.1000.105.0E-1396128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-897128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.74298126IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-498125IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-6100125IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.26E-15161237IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.6E-16165236IPR004088K Homology domain, type 1
SMARTSM003223.0E-12166236IPR004087K Homology domain
PROSITE profilePS5008414.278167231IPR004088K Homology domain, type 1
PfamPF000131.6E-11169233IPR004088K Homology domain, type 1
CDDcd001053.67E-14169231No hitNo description
Gene3DG3DSA:4.10.1000.101.1E-16256292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-9259291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.746261288IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-7261287IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9262286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
XSYCISIXSP PSYGYPQEKQ NGCDDMDSLS SGIGSKSKPC TKFFSTAGCQ FGESCHFLHY  60
VPGGYNAVAQ MMNLTPAPAS RNAVATPSIP NGASGSPAVK TKICSRFNTA EGCKFGDKCH  120
FAHGEWEIGK PIIPWHEDPR AMGPGPGRFG GRMEPAVPGP AAGFGASATT KISVDASLAG  180
GIIGKSGVNS KQICRQTGAK LAIRDHESDP NLRNIELEGT FEQIQQASAM VRELIASLGS  240
SVVGLGRASG GPGGPPPQMS NYKTKLCENF AKGSCTFGER CHFAHGAAEL RKSGV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245694.11e-161PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-105C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1J6IEQ91e-159A0A1J6IEQ9_NICAT; Zinc finger ccch domain-containing protein 14
STRINGXP_009780696.11e-159(Nicotiana sylvestris)