PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14386_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 287aa    MW: 30083.1 Da    PI: 10.5646
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14386_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.92e-0992117227
                                           -S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                           kt++C++f     Ck+Gd+C+FaHg+
  cra_locus_14386_iso_3_len_1102_ver_3  92 KTKICSRFNTAEGCKFGDKCHFAHGE 117
                                           89**********************96 PP
2zf-CCCH37.44.2e-12254278126
                                           --S---SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                           ykt+lC +fa+ G C +G+rC+FaHg
  cra_locus_14386_iso_3_len_1102_ver_3 254 YKTKLCENFAK-GSCTFGERCHFAHG 278
                                           9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.8E-1388120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-889120IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-490117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.74290118IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-692117IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.97E-15153229IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.5E-16157228IPR004088K Homology domain, type 1
SMARTSM003223.0E-12158228IPR004087K Homology domain
PROSITE profilePS5008414.278159223IPR004088K Homology domain, type 1
PfamPF000131.5E-11161225IPR004088K Homology domain, type 1
CDDcd001056.07E-14161223No hitNo description
Gene3DG3DSA:4.10.1000.101.1E-16248284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-9251283IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-7253279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.746253280IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9254278IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
VVTASRSKVL RAMDTRKRSR MDATVSANGG FKKSKPVLRA ANLVRAXHFL HYVPGGYNAV  60
AQMMNLTPAP ASRNAVATPS IPNGASGSPA VKTKICSRFN TAEGCKFGDK CHFAHGEWEI  120
GKPIIPWHED PRAMGPGPGR FGGRMEPAVP GPAAGFGASA TTKISVDASL AGGIIGKSGV  180
NSKQICRQTG AKLAIRDHES DPNLRNIELE GTFEQIQQAS AMVRELIASL GSSVVGLGRA  240
SGGPGGPPPQ MSNYKTKLCE NFAKGSCTFG ERCHFAHGAA ELRKSGV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245694.11e-145PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R08e-88C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1J6IEQ91e-144A0A1J6IEQ9_NICAT; Zinc finger ccch domain-containing protein 14
STRINGXP_009780696.11e-143(Nicotiana sylvestris)